General information for g876.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucuronosyltransferase 1-8.
Parent gene
- The parent gene g876 is located on chr_3: 6617556..6626867 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g876 | g876.t10 | TSS | g876.t10 | 6616059 | 6616059 |
| chr_3 | g876 | g876.t10 | isoform | g876.t10 | 6616086 | 6617929 |
| chr_3 | g876 | g876.t10 | exon | g876.t10.exon1 | 6616086 | 6616305 |
| chr_3 | g876 | g876.t10 | exon | g876.t10.exon2 | 6616366 | 6616652 |
| chr_3 | g876 | g876.t10 | cds | g876.t10.CDS1 | 6616390 | 6616652 |
| chr_3 | g876 | g876.t10 | exon | g876.t10.exon3 | 6616823 | 6617410 |
| chr_3 | g876 | g876.t10 | cds | g876.t10.CDS2 | 6616823 | 6617410 |
| chr_3 | g876 | g876.t10 | exon | g876.t10.exon4 | 6617470 | 6617929 |
| chr_3 | g876 | g876.t10 | cds | g876.t10.CDS3 | 6617470 | 6617929 |
| chr_3 | g876 | g876.t10 | TTS | g876.t10 | 6617993 | 6617993 |
Sequences
>g876.t10 Gene=g876 Length=1555
ATGAAGCTCTCAATTGCTTTGATTCTTCTCTTTGTTAATGGAATTCTTGGTTTTAAAGTC
TTAGGAATAATTCCTTTTGGTAGCAAATCACATTTTGCTATTGGTCATTCAATCTTGAAA
AGTTTAGCTGAAGCTGGACATGAAGTTACAGCCATTTCACCTTATCCATTAAAAAAACCA
ATGAAAAATTACAAAGATATCAGCACAGAGGATTATATTGAATTTTTTAGATAATGCTGC
AAATATGTTTGATTTTGAGAACAGTTTCTTTGTCAATAAAATAATGGAATTGATTGTAAT
TCATTGGATGGGAACTGAACTTGTTGAATATTATGTAAATCATCCAAAGGTCGTCGAGTT
TCTTAAAACTAATGAGAAGTTTGATATTTGTGTTATTGAAGTTTTTAACTTTGATGCATT
ACTTGGAATTGCTGAACATGTGGGCTGCAAAGTTGTTTCTTATGTCACTTGTGGTATTGT
AAAGTGGACTGATGATATTTCTGGACTTGTTTCACCACCATCATATGTACCAAAACATTA
CGTTGAATACACTGATCGAATGACATTTAAACAACGACTAATAAATACAGTTTACTCACA
CATTGAAGATTTTATTTATGGACAAATTGTAAAGAAAAATCAAAAAAGACTTTATGAGAA
ATATTTCCCTAATGCAATCAAGACTTTTGATGAAATGTATAAAAATACTTCAATACTTTT
CATGAATACTCACATTTCAACATCGACAGCTCGACCTTATATGCCAATTCAAGTTGAAAT
TGGAGGGATTCATATTCAGCCGGCTAAACCACTGCCCAAAGATATACAAGAATTTTTAGA
CTCAGCAACTGATGGTGCAATCATTTTTTCAATGGGTTCAGTTATTAAGTCGAATCAATG
GCCAGTTGATAAACGTGAAGCATTTATAAAAATTTTTAGCAAATTAAAACAGAAAATAAT
TTGGAAATATGAAAATGACACATTGCCTAATAAACCTGACAATGTTATGATCAGTTCATG
GATGCCACAAAGAGACATTTTAGCTCATCCTAATGTTAAAGTATTCATTACACATGGGGG
ACTGGGAGGCACAACTGAAGCTCTTGTTGAAGGAGTTCCTATTCTAGGCTTGCCTATATT
TGGTGATCAAAAAATGAATATGGTTAAAGCAGTTACTCGAGGCTATGGTTTGCAAGTTTA
TTTTAAAGACATTTCTGAAGAAACTATTGAATCTGCACTTAAAGAATTATTGAACAATCC
AATGTACAAAGAAAATGCAAAAATTATTTCAAAACGCTTTAATGATCGACCAATGACACC
ACAACAATCAGTAGTTTATTGGACTGAATATGTTCATAGACATGACGGAGCGCCACACTT
GAAAGCTGCTGCAATTGATTTGGATTTTATCGCATTTCACATGATTGATATTTATGCTGT
TTTAATATTCATCACAATTTTAATTATTTATATTGATTATTTAATTCTCAAATGGCTTTT
TAGAAAATGTTTTGGAAAATCAAAGAAAATAGATAAAAAAGATAAGAAAAATTAG
>g876.t10 Gene=g876 Length=436
MFDFENSFFVNKIMELIVIHWMGTELVEYYVNHPKVVEFLKTNEKFDICVIEVFNFDALL
GIAEHVGCKVVSYVTCGIVKWTDDISGLVSPPSYVPKHYVEYTDRMTFKQRLINTVYSHI
EDFIYGQIVKKNQKRLYEKYFPNAIKTFDEMYKNTSILFMNTHISTSTARPYMPIQVEIG
GIHIQPAKPLPKDIQEFLDSATDGAIIFSMGSVIKSNQWPVDKREAFIKIFSKLKQKIIW
KYENDTLPNKPDNVMISSWMPQRDILAHPNVKVFITHGGLGGTTEALVEGVPILGLPIFG
DQKMNMVKAVTRGYGLQVYFKDISEETIESALKELLNNPMYKENAKIISKRFNDRPMTPQ
QSVVYWTEYVHRHDGAPHLKAAAIDLDFIAFHMIDIYAVLIFITILIIYIDYLILKWLFR
KCFGKSKKIDKKDKKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g876.t10 | CDD | cd03784 | GT1_Gtf-like | 34 | 366 | 1.73226E-58 |
| 5 | g876.t10 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 185 | 354 | 1.7E-47 |
| 2 | g876.t10 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 8 | 410 | 2.1E-118 |
| 3 | g876.t10 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 8 | 410 | 2.1E-118 |
| 1 | g876.t10 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 35 | 428 | 2.4E-87 |
| 7 | g876.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 395 | - |
| 8 | g876.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 396 | 419 | - |
| 6 | g876.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 420 | 436 | - |
| 11 | g876.t10 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 259 | 302 | - |
| 4 | g876.t10 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 15 | 379 | 7.33E-95 |
| 10 | g876.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 396 | 418 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00699 (glucuronosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed