General information for g876.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g876 is located on chr_3: 6617556..6626867 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g876 | g876.t18 | TSS | g876.t18 | 6616059 | 6616059 |
| chr_3 | g876 | g876.t18 | isoform | g876.t18 | 6616298 | 6617019 |
| chr_3 | g876 | g876.t18 | exon | g876.t18.exon1 | 6616298 | 6616305 |
| chr_3 | g876 | g876.t18 | exon | g876.t18.exon2 | 6616366 | 6616652 |
| chr_3 | g876 | g876.t18 | cds | g876.t18.CDS1 | 6616390 | 6616652 |
| chr_3 | g876 | g876.t18 | exon | g876.t18.exon3 | 6616823 | 6617019 |
| chr_3 | g876 | g876.t18 | cds | g876.t18.CDS2 | 6616823 | 6617018 |
| chr_3 | g876 | g876.t18 | TTS | g876.t18 | 6617993 | 6617993 |
Sequences
>g876.t18 Gene=g876 Length=492
TTATATTGAATTTTTTAGATAATGCTGCAAATATGTTTGATTTTGAGAACAGTTTCTTTG
TCAATAAAATAATGGAATTGATTGTAATTCATTGGATGGGAACTGAACTTGTTGAATATT
ATGTAAATCATCCAAAGGTCGTCGAGTTTCTTAAAACTAATGAGAAGTTTGATATTTGTG
TTATTGAAGTTTTTAACTTTGATGCATTACTTGGAATTGCTGAACATGTGGGCTGCAAAG
TTGTTTCTTATGTCACTTGTGGTATTGTAAAGTGGACTGATGATATTTCTGGACTTGTTT
CACCACCATCATATGTACCAAAACATTACGTTGAATACACTGATCGAATGACATTTAAAC
AACGACTAATAAATACAGTTTACTCACACATTGAAGATTTTATTTATGGACAAATTGTAA
AGAAAAATCAAAAAAGACTTTATGAGAAATATTTCCCTAATGCAATCAAGACTTTTGATG
AAATGTATAAAA
>g876.t18 Gene=g876 Length=153
MFDFENSFFVNKIMELIVIHWMGTELVEYYVNHPKVVEFLKTNEKFDICVIEVFNFDALL
GIAEHVGCKVVSYVTCGIVKWTDDISGLVSPPSYVPKHYVEYTDRMTFKQRLINTVYSHI
EDFIYGQIVKKNQKRLYEKYFPNAIKTFDEMYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g876.t18 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 8 | 144 | 0 |
| 3 | g876.t18 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 8 | 144 | 0 |
| 1 | g876.t18 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 33 | 146 | 0 |
| 4 | g876.t18 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 10 | 152 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
