General information for g876.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g876 is located on chr_3: 6617556..6626867 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g876 | g876.t3 | TSS | g876.t3 | 6616059 | 6616059 |
| chr_3 | g876 | g876.t3 | isoform | g876.t3 | 6616086 | 6617019 |
| chr_3 | g876 | g876.t3 | exon | g876.t3.exon1 | 6616086 | 6616320 |
| chr_3 | g876 | g876.t3 | cds | g876.t3.CDS1 | 6616086 | 6616320 |
| chr_3 | g876 | g876.t3 | exon | g876.t3.exon2 | 6616376 | 6616652 |
| chr_3 | g876 | g876.t3 | cds | g876.t3.CDS2 | 6616376 | 6616652 |
| chr_3 | g876 | g876.t3 | exon | g876.t3.exon3 | 6616823 | 6617019 |
| chr_3 | g876 | g876.t3 | cds | g876.t3.CDS3 | 6616823 | 6617018 |
| chr_3 | g876 | g876.t3 | TTS | g876.t3 | 6617993 | 6617993 |
Sequences
>g876.t3 Gene=g876 Length=709
ATGAAGCTCTCAATTGCTTTGATTCTTCTCTTTGTTAATGGAATTCTTGGTTTTAAAGTC
TTAGGAATAATTCCTTTTGGTAGCAAATCACATTTTGCTATTGGTCATTCAATCTTGAAA
AGTTTAGCTGAAGCTGGACATGAAGTTACAGCCATTTCACCTTATCCATTAAAAAAACCA
ATGAAAAATTACAAAGATATCAGCACAGAGGATTATATTGAATTTTTTTTTAAGAATAAT
GCTGCAAATATGTTTGATTTTGAGAACAGTTTCTTTGTCAATAAAATAATGGAATTGATT
GTAATTCATTGGATGGGAACTGAACTTGTTGAATATTATGTAAATCATCCAAAGGTCGTC
GAGTTTCTTAAAACTAATGAGAAGTTTGATATTTGTGTTATTGAAGTTTTTAACTTTGAT
GCATTACTTGGAATTGCTGAACATGTGGGCTGCAAAGTTGTTTCTTATGTCACTTGTGGT
ATTGTAAAGTGGACTGATGATATTTCTGGACTTGTTTCACCACCATCATATGTACCAAAA
CATTACGTTGAATACACTGATCGAATGACATTTAAACAACGACTAATAAATACAGTTTAC
TCACACATTGAAGATTTTATTTATGGACAAATTGTAAAGAAAAATCAAAAAAGACTTTAT
GAGAAATATTTCCCTAATGCAATCAAGACTTTTGATGAAATGTATAAAA
>g876.t3 Gene=g876 Length=236
MKLSIALILLFVNGILGFKVLGIIPFGSKSHFAIGHSILKSLAEAGHEVTAISPYPLKKP
MKNYKDISTEDYIEFFFKNNAANMFDFENSFFVNKIMELIVIHWMGTELVEYYVNHPKVV
EFLKTNEKFDICVIEVFNFDALLGIAEHVGCKVVSYVTCGIVKWTDDISGLVSPPSYVPK
HYVEYTDRMTFKQRLINTVYSHIEDFIYGQIVKKNQKRLYEKYFPNAIKTFDEMYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g876.t3 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 16 | 226 | 6.0E-30 |
| 3 | g876.t3 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 16 | 226 | 6.0E-30 |
| 1 | g876.t3 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 29 | 228 | 8.7E-11 |
| 7 | g876.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 8 | g876.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 9 | g876.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 12 | - |
| 10 | g876.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 6 | g876.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 236 | - |
| 5 | g876.t3 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 18 | 235 | 1.26E-25 |
| 4 | g876.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
