Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g877 g877.t24 TSS g877.t24 6618107 6618107
chr_3 g877 g877.t24 isoform g877.t24 6618133 6628195
chr_3 g877 g877.t24 exon g877.t24.exon1 6618133 6618367
chr_3 g877 g877.t24 cds g877.t24.CDS1 6618133 6618367
chr_3 g877 g877.t24 exon g877.t24.exon2 6618532 6618718
chr_3 g877 g877.t24 cds g877.t24.CDS2 6618532 6618718
chr_3 g877 g877.t24 exon g877.t24.exon3 6619039 6619144
chr_3 g877 g877.t24 cds g877.t24.CDS3 6619039 6619144
chr_3 g877 g877.t24 exon g877.t24.exon4 6628078 6628195
chr_3 g877 g877.t24 cds g877.t24.CDS4 6628078 6628095
chr_3 g877 g877.t24 TTS g877.t24 NA NA

Sequences

>g877.t24 Gene=g877 Length=646
ATGAAGCTCTCTTTAGCATTAATTGTTGTTTTTATCAATGGAATATTTGGTTTTAAAGTG
TTGGGAATTTTGCCTTTTGGCAGCAAGTCACATTTTGCAATTGGACATGCAATTTTGAAA
AGTTTAGCAGAAGCTGGACATAATGTAACGTCGATTTCACCATATCCATTAAAAGAACCT
ATGGAAAATTACAAAGATATCAGCACAGAAGATTACGTTGAAGTATTTTTTAAAATTGTG
AAATATCATGCAGTTCATCCTAAAGTTATTGAATTTATGAACACTTATGAGAAGTTTGAT
ATTTGCTTTATGGAAATTTTTAATTATGATGCATTACTTGGAATTGCCGAACATGTTGGT
TGCAAAGTTATTTCGTATACCACAACAGCTGTTGTTAAATGGGCTGATGATATGACTGGA
AACGTTTCACCACCATCATATGTACCAAGACCGTATGTTCAATATTCAGATAAAATGTCA
TTCAGAGAACGACTTATGAATACATTTTACGCTCACATTGAAGACATATTTATGAGTTCA
TCATAAAAACCAAACCAAAGAAGACTTATGCAGAAATATTTCCCAATGCAACTAAAACAT
TTGGAACGAGATGTACAAAGATATCTCAATGATTTTCATGAACACT

>g877.t24 Gene=g877 Length=181
MKLSLALIVVFINGIFGFKVLGILPFGSKSHFAIGHAILKSLAEAGHNVTSISPYPLKEP
MENYKDISTEDYVEVFFKIVKYHAVHPKVIEFMNTYEKFDICFMEIFNYDALLGIAEHVG
CKVISYTTTAVVKWADDMTGNVSPPSYVPRPYVQYSDKMSFRERLMNTFYAHIEDIFMSS
S

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g877.t24 PANTHER PTHR48043 EG:EG0003.4 PROTEIN-RELATED 16 84 9.4E-23
5 g877.t24 PANTHER PTHR48043:SF114 DOROTHY, ISOFORM A-RELATED 16 84 9.4E-23
2 g877.t24 PANTHER PTHR48043 EG:EG0003.4 PROTEIN-RELATED 93 171 9.4E-23
4 g877.t24 PANTHER PTHR48043:SF114 DOROTHY, ISOFORM A-RELATED 93 171 9.4E-23
1 g877.t24 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 71 175 3.2E-6
9 g877.t24 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
10 g877.t24 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
11 g877.t24 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 12 -
12 g877.t24 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 17 -
8 g877.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 181 -
7 g877.t24 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase 18 178 1.35E-20
6 g877.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008194 UDP-glycosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed