General information for g877.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g877 is located on chr_3: 6619998..6629641 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g877 | g877.t7 | TSS | g877.t7 | 6618107 | 6618107 |
| chr_3 | g877 | g877.t7 | isoform | g877.t7 | 6618133 | 6619388 |
| chr_3 | g877 | g877.t7 | exon | g877.t7.exon1 | 6618133 | 6618718 |
| chr_3 | g877 | g877.t7 | exon | g877.t7.exon2 | 6619044 | 6619388 |
| chr_3 | g877 | g877.t7 | cds | g877.t7.CDS1 | 6619091 | 6619387 |
| chr_3 | g877 | g877.t7 | TTS | g877.t7 | 6620351 | 6620351 |
Sequences
>g877.t7 Gene=g877 Length=931
ATGAAGCTCTCTTTAGCATTAATTGTTGTTTTTATCAATGGAATATTTGGTTTTAAAGTG
TTGGGAATTTTGCCTTTTGGCAGCAAGTCACATTTTGCAATTGGACATGCAATTTTGAAA
AGTTTAGCAGAAGCTGGACATAATGTAACGTCGATTTCACCATATCCATTAAAAGAACCT
ATGGAAAATTACAAAGATATCAGCACAGAAGATTACGTTGAAGTATTTTTTAAAAGTGAG
TGGAAAATTTTTTTCTTTTTAAATTTCATAACATAAAATGACAATAAATATTTAATTTAG
ATAATGCTGTGAATATGTTTGCTTTTGAAAATACTCCTATCGTCAATAAAATTATGGAAT
TAATATTTATTTATTGGATTAATCGAAATGGCAATGAAGTTGTGAAATATCATGCAGTTC
ATCCTAAAGTTATTGAATTTATGAACACTTATGAGAAGTTTGATATTTGCTTTATGGAAA
TTTTTAATTATGATGCATTACTTGGAATTGCCGAACATGTTGGTTGCAAAGTTATTTCGT
ATACCACAACAGCTGTTGTTAAATGGGCTGATGATATGACTGGAAACACCACCATCATAT
GTACCAAGACCGTATGTTCAATATTCAGATAAAATGTCATTCAGAGAACGACTTATGAAT
ACATTTTACGCTCACATTGAAGACATAGTTTATGAATTCATCATAAAACCAAACCAAAGA
AGACTTTATGAGAAATATTTCCCAAATGCAACTAAAACATTTGACGAGATGTACAAAGAT
ACTTCAATGATTTTCATGAACACTCACATTTCACTGACAGCACCTCGTCCGTATTTACCA
AGTTTTGTAGAAATTGGAGGAATTCATATTCAACCTGTAAAAAAGTTGCCAAAAGTATTT
CAAAATTTCTTAGATTCAGCGACTGATGGTG
>g877.t7 Gene=g877 Length=99
MSFRERLMNTFYAHIEDIVYEFIIKPNQRRLYEKYFPNATKTFDEMYKDTSMIFMNTHIS
LTAPRPYLPSFVEIGGIHIQPVKKLPKVFQNFLDSATDG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g877.t7 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 1 | 99 | 0 |
| 3 | g877.t7 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 1 | 99 | 0 |
| 1 | g877.t7 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 1 | 96 | 0 |
| 4 | g877.t7 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 1 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
