General information for g8771.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Beta-1,4-glucuronyltransferase 1.
Parent gene
- The parent gene g8771 is located on chr_2: 33058236..33058880 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8771 | g8771.t1 | TSS | g8771.t1 | 33056635 | 33056635 |
| chr_2 | g8771 | g8771.t1 | isoform | g8771.t1 | 33057024 | 33058880 |
| chr_2 | g8771 | g8771.t1 | exon | g8771.t1.exon1 | 33057024 | 33057032 |
| chr_2 | g8771 | g8771.t1 | cds | g8771.t1.CDS1 | 33057024 | 33057032 |
| chr_2 | g8771 | g8771.t1 | exon | g8771.t1.exon2 | 33057096 | 33057480 |
| chr_2 | g8771 | g8771.t1 | cds | g8771.t1.CDS2 | 33057096 | 33057480 |
| chr_2 | g8771 | g8771.t1 | exon | g8771.t1.exon3 | 33057568 | 33057603 |
| chr_2 | g8771 | g8771.t1 | cds | g8771.t1.CDS3 | 33057568 | 33057603 |
| chr_2 | g8771 | g8771.t1 | exon | g8771.t1.exon4 | 33057676 | 33058240 |
| chr_2 | g8771 | g8771.t1 | cds | g8771.t1.CDS4 | 33057676 | 33058240 |
| chr_2 | g8771 | g8771.t1 | exon | g8771.t1.exon5 | 33058299 | 33058362 |
| chr_2 | g8771 | g8771.t1 | cds | g8771.t1.CDS5 | 33058299 | 33058362 |
| chr_2 | g8771 | g8771.t1 | exon | g8771.t1.exon6 | 33058417 | 33058506 |
| chr_2 | g8771 | g8771.t1 | cds | g8771.t1.CDS6 | 33058417 | 33058506 |
| chr_2 | g8771 | g8771.t1 | exon | g8771.t1.exon7 | 33058566 | 33058739 |
| chr_2 | g8771 | g8771.t1 | cds | g8771.t1.CDS7 | 33058566 | 33058739 |
| chr_2 | g8771 | g8771.t1 | exon | g8771.t1.exon8 | 33058803 | 33058880 |
| chr_2 | g8771 | g8771.t1 | cds | g8771.t1.CDS8 | 33058803 | 33058880 |
| chr_2 | g8771 | g8771.t1 | TTS | g8771.t1 | 33058940 | 33058940 |
Sequences
>g8771.t1 Gene=g8771 Length=1401
ATGATTCAGACTCCATGTCGTCTTCGTAACTTCTCAGTCTTTAGTGTGCTTGCATTGACA
ATTACAAATGTCTTTCTTACTCTACGGCTTTTACAATCCGATTGTGGACATCATGTGAAT
AATGAACCTACAACCTCATTAATTCCAAAATTGCCATCAATTCTAACACCCGCAACATGT
CTTGAATATATTTTATCTGATAATAATGGAAATGTGAGCGAAAAGGCTGTGTTTTCTGGA
CTTGATTTGAAATTGGGCCGATGGGATCAGAGACGAATGTATAAAATCTTTGATTTCGCA
ATTCATGGCGAAAAATACACAGATATATCGGATAAACTGAACGTGACTTTAGCAACACAA
AGTTCTATCGAGAAAATTTTCTCTCTTGTACAAGTTTCCCATCACTGGAGTGGTCCGATA
TCCATAGCAGTATATGTAGCTGGTGATGACGAGTTATATTTATTACAAATCTACTTGTCA
TATTTGCGATACTGTTTTTCTACTATTCGTGAACGTGTCTCATTCCATCTTTCATTTCCC
AAAGATCGACCTCCAACACAAATTAGAAGTGTTCACTTGAGTGATGTAATTACAAAATAT
AATTGTGCCAAACCAGAACAAACGCTTAACGAGCTTCTCAAGCAAAGAACAGCAGAAACA
AGAAAATGGAGAATAAAATTTCCCTATCCGCAAAATTTTTTACGAAATGTCGCTCGTAAA
AATAGTCAAACACATTATGTATTTTTGGTTGACGTTGATATTATACCCTCAGCATCTTTT
AATTTTGCGGAACAACTGGACAAATTTTTGAGAAAAACCAAATGCGCGAATAGCAATAAT
TTATGCGCTTACGTTATTCCAACTTATGAATTAGATGAGAGAGTAAGATTTCCACGCAAC
AAAACTGATTTGATAAGACTGGCAAATAAAGGACTAGCTCGTCCATTTCATAATAAGGTT
TTCATATATAATCAATATGCAACGAATTTCTCTAGATGGCAAGCAGATTTAACAGAATCT
GAAGATGTGAAAATAAGCCATGTTGTCAGTAATTTTGAATTTCTTTATGAGCCTTTTTTT
GTTGCTTCTGATAATAATCCTCCTCATGATGAACGCTTCATTGGCTATGGATATACTAGA
AATACTCAAGTCTATGAAATGTTTGTGGCTGGTTATTCTTTTCAAGTTTTGACTCCATTA
TTTACTATCCATTGGGGTTTACAAAATAAAAAATCAAGACCAGCATGGCGTGAACATCAA
AATAATATAAATCGAAAGCATTTTGAAATATTCAAGCGTGAATTGTTTGCAAGATACCAT
AAGGATCCTTTAAAAATGATGCAACCAAAAAAACCAAAATCGATTACAAATGCTGGAAGT
AGCGGACTAAATGTTGGTTAA
>g8771.t1 Gene=g8771 Length=466
MIQTPCRLRNFSVFSVLALTITNVFLTLRLLQSDCGHHVNNEPTTSLIPKLPSILTPATC
LEYILSDNNGNVSEKAVFSGLDLKLGRWDQRRMYKIFDFAIHGEKYTDISDKLNVTLATQ
SSIEKIFSLVQVSHHWSGPISIAVYVAGDDELYLLQIYLSYLRYCFSTIRERVSFHLSFP
KDRPPTQIRSVHLSDVITKYNCAKPEQTLNELLKQRTAETRKWRIKFPYPQNFLRNVARK
NSQTHYVFLVDVDIIPSASFNFAEQLDKFLRKTKCANSNNLCAYVIPTYELDERVRFPRN
KTDLIRLANKGLARPFHNKVFIYNQYATNFSRWQADLTESEDVKISHVVSNFEFLYEPFF
VASDNNPPHDERFIGYGYTRNTQVYEMFVAGYSFQVLTPLFTIHWGLQNKKSRPAWREHQ
NNINRKHFEIFKRELFARYHKDPLKMMQPKKPKSITNAGSSGLNVG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g8771.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 466 | - |
| 2 | g8771.t1 | PANTHER | PTHR46420 | BETA-1,4-GLUCURONYLTRANSFERASE 1 | 21 | 443 | 2.1E-111 |
| 1 | g8771.t1 | Pfam | PF13896 | Glycosyl-transferase for dystroglycan | 114 | 439 | 5.9E-106 |
| 4 | g8771.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 6 | g8771.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 31 | - |
| 5 | g8771.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 32 | 466 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0015020 | glucuronosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K21032 (beta-1,4-glucuronyltransferase 1 [EC:2.4.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
