General information for g8784.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Beta-1,3-glucan-binding protein.
Parent gene
- The parent gene g8784 is located on chr_2: 33127329..33129127 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8784 | g8784.t2 | isoform | g8784.t2 | 33127329 | 33129127 |
| chr_2 | g8784 | g8784.t2 | exon | g8784.t2.exon1 | 33127329 | 33127890 |
| chr_2 | g8784 | g8784.t2 | cds | g8784.t2.CDS1 | 33127329 | 33127890 |
| chr_2 | g8784 | g8784.t2 | exon | g8784.t2.exon2 | 33128559 | 33129127 |
| chr_2 | g8784 | g8784.t2 | cds | g8784.t2.CDS2 | 33128559 | 33128656 |
| chr_2 | g8784 | g8784.t2 | TSS | g8784.t2 | NA | NA |
| chr_2 | g8784 | g8784.t2 | TTS | g8784.t2 | NA | NA |
Sequences
>g8784.t2 Gene=g8784 Length=1131
ATGTTGAAAGCTCTTGAATTTAAATTTATTTTTCTTTTTCTTGTGTTTGTGAATTTTAGT
TCTATTAAAGCAATTTGTATTAAATCACTTACAACTGTTTATTGGAGTGTTGCACCAAAA
GAATTTTGTTCCGGTGAAAAAATTTTTGAAGACAATTTTGATAATTTGAATCGATCAGTT
TGGTTGTTAGAAAATAGCTTGGGAGTTGGTGGTGGAAGTAAAGAATTTCAATGGTACACT
AATGATCCAATCAATGCATATACAGAATCAGGAATTTTACATATCAAACCAACATTAACA
GCTGATATTTATGGAGAAGAATTTTTATATTCAGGAAATGTTTTTATACCAAAAGATGAA
TGCACTCAAGATATTTTTAGTGGATGTAATAGAACAGGAAGCTATACACAAATAATAAAT
CCTATTAGAAGTGTGCGAATGAACACGATGCCATCATTTTCTTTTAAATTTGGAACAGTT
GAAATTCGTGCTAAAAATCCAACTGGCGATTGGCTTTTTCCTGCAATTTGGTTAAATGTG
AGAAAAAAATTTCAAAATTTATTGGTGATACAAGCGTTGGTGCAGATCAAATATCCACAA
CTCTTCATTTTGGTCCAAAAGCTGGAATTGATGGTTGGAGATATGCACATTTTGCTTTAA
ATGATCAACTCAGTCCATTTAATCTAGATTTTCATGTTTATAAAATGATTTGGACACCAA
GAAGTTTTGAATTTTATGTTGATAACAAACTTATAGGAATTATTGATGCAAATCAAGGTT
TTTTCAAAAGAGGAAAATTTAGTGATGAACTTTATTCTAATCCATGGTCTAATGCTACAA
TAATGGCACCATTTGATCAAGAATTTTATGTCATTATTGATTTAGCTGTTGGAGGAACAA
GCTTTTTCAGTGATTATTACCAAAATTTACCTCTTAAAAAACCAGTAAGTTTTTGCTTTT
TGCTAATTTAATGGTAAAAGATCTAACTTAATTTTTCAGTGGTTAAACAATTCAACTCGA
CCTGCAGCAGACTTTTGGGAAAACAGAAAACAATGGCTTCCAACTTGGCAACTTGACGAG
AATGAAAATTCGCACATGCTTATTGATTATGTGAAAATTTGGGCACTTTAA
>g8784.t2 Gene=g8784 Length=219
MLKALEFKFIFLFLVFVNFSSIKAICIKSLTTVYWSVAPKEFCSGEKIFEDNFDNLNRSV
WLLENSLGVGGGSKEFQWYTNDPINAYTESGILHIKPTLTADIYGEEFLYSGNVFIPKDE
CTQDIFSGCNRTGSYTQIINPIRSVRMNTMPSFSFKFGTVEIRAKNPTGDWLFPAIWLNV
RKKFQNLLVIQALVQIKYPQLFILVQKLELMVGDMHILL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8784.t2 | Gene3D | G3DSA:2.60.120.200 | - | 40 | 187 | 5.5E-24 |
| 1 | g8784.t2 | PANTHER | PTHR10963:SF55 | EXTRACELLULAR AGARASE | 23 | 179 | 2.8E-31 |
| 2 | g8784.t2 | PANTHER | PTHR10963 | GLYCOSYL HYDROLASE-RELATED | 23 | 179 | 2.8E-31 |
| 7 | g8784.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 24 | - |
| 8 | g8784.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 8 | - |
| 9 | g8784.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 9 | 19 | - |
| 10 | g8784.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 20 | 24 | - |
| 6 | g8784.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 219 | - |
| 5 | g8784.t2 | ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 33 | 219 | 9.077 |
| 3 | g8784.t2 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 37 | 178 | 6.33E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
