General information for g8785.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Beta-1,3-glucan-binding protein.
Parent gene
- The parent gene g8785 is located on chr_2: 33130735..33131379 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8785 | g8785.t4 | TSS | g8785.t4 | 33130039 | 33130039 |
| chr_2 | g8785 | g8785.t4 | isoform | g8785.t4 | 33130062 | 33131379 |
| chr_2 | g8785 | g8785.t4 | exon | g8785.t4.exon1 | 33130062 | 33130248 |
| chr_2 | g8785 | g8785.t4 | cds | g8785.t4.CDS1 | 33130062 | 33130248 |
| chr_2 | g8785 | g8785.t4 | exon | g8785.t4.exon2 | 33130306 | 33130659 |
| chr_2 | g8785 | g8785.t4 | cds | g8785.t4.CDS2 | 33130306 | 33130659 |
| chr_2 | g8785 | g8785.t4 | exon | g8785.t4.exon3 | 33130711 | 33130977 |
| chr_2 | g8785 | g8785.t4 | cds | g8785.t4.CDS3 | 33130711 | 33130977 |
| chr_2 | g8785 | g8785.t4 | exon | g8785.t4.exon4 | 33131028 | 33131379 |
| chr_2 | g8785 | g8785.t4 | cds | g8785.t4.CDS4 | 33131028 | 33131203 |
| chr_2 | g8785 | g8785.t4 | TTS | g8785.t4 | 33131409 | 33131409 |
Sequences
>g8785.t4 Gene=g8785 Length=1160
ATGAACGTTTTTAGAGGCATTTTATTTTTATTTTTTGCAATAAATGTAAATTGTCAATGC
AAAAAATCTATAACAACAGTCATTGGATCGAAAAAACCGTCACAAATTTGTTCTGGTCAA
TTGATTTTTGAGGATAATTTTGATAATGTTGATAGATCAAAATGGAAATTTGAAAATACA
CTAGCTGGTGGTGGAAATTGGGAATTTCAATGGTATCCAGGCTATGATTCTCGAAATGCA
TTCACAAAAAATGGGAAATTGCATATTGCACCAACAACAACAGCAAGTATCTATGGTGAA
GACTTTTTAACACATGCAAGAGTTCAAATTCCAACAAATCAATGTACATGGTCTGCCGAC
TATGGCTGTGATAGACAGGGAACAGTTGATCATATTATAAATCCTATAAGAAGTGCAAGA
ATGGATACTCGTGATTCATTTTCTTTTAAATATGGTGTAATGGAAATAAGAGCAAAATTA
CCATCTGGCGATTGGTTATGGCCAGCATTATGGATGATGCCAAAAAATAGTGTCTATGGA
ACATGGCCTCGATCAGGTGAGATAGATTTAATGGAATCAAGAGGAAATCGTCAACTTTAT
CAAGGAAATACAAACATAGGAATTGAACAAATTTCAACTACTTTACATTTTGGCCCTGAT
TACAATCATAATGGCTTTATGACAGCTCATTATGAAAAGAATAGAATTCCAGGCTACAAT
CAAGATTTTCATCTTTATAAATTAGAATGGAATTCTTCACAAATTAAATTCTACATTGAT
AATCAAATTTATGCAACTGTAAATGCTGGAAATGGTTTTTGGGATCGTGGTGGTTTCTCT
GGTCAATCTAATCCATGGGCAAATGCTAGTAAAATGGCACCATTTGATCAAGAATTTTTC
ATCATCATGAATTTAGCTGTTGGAGGAACAAATGGATTTTTTCCAGACGATACAGTGAAT
AGACCGAATAAAAAACCTTGGTAAAATTCATAAAATTTACTTTTAAAATTTTTATCATAA
TTTAAATTTTTAGGAAGAATAATAGTGAAAGAGCAGCAGCTGATTTTTGGAATAATAAAA
ATGATTGGCTACCAGGATGGAATTTAGGAAATGACGATGCCCACTTGCAAGTTGACTATG
TTAGAGTTTGGGCACTTTGA
>g8785.t4 Gene=g8785 Length=327
MNVFRGILFLFFAINVNCQCKKSITTVIGSKKPSQICSGQLIFEDNFDNVDRSKWKFENT
LAGGGNWEFQWYPGYDSRNAFTKNGKLHIAPTTTASIYGEDFLTHARVQIPTNQCTWSAD
YGCDRQGTVDHIINPIRSARMDTRDSFSFKYGVMEIRAKLPSGDWLWPALWMMPKNSVYG
TWPRSGEIDLMESRGNRQLYQGNTNIGIEQISTTLHFGPDYNHNGFMTAHYEKNRIPGYN
QDFHLYKLEWNSSQIKFYIDNQIYATVNAGNGFWDRGGFSGQSNPWANASKMAPFDQEFF
IIMNLAVGGTNGFFPDDTVNRPNKKPW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8785.t4 | Gene3D | G3DSA:2.60.120.200 | - | 37 | 325 | 1.8E-70 |
| 2 | g8785.t4 | PANTHER | PTHR10963:SF55 | EXTRACELLULAR AGARASE | 27 | 316 | 7.0E-83 |
| 3 | g8785.t4 | PANTHER | PTHR10963 | GLYCOSYL HYDROLASE-RELATED | 27 | 316 | 7.0E-83 |
| 1 | g8785.t4 | Pfam | PF00722 | Glycosyl hydrolases family 16 | 115 | 271 | 1.2E-20 |
| 9 | g8785.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 10 | g8785.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 11 | g8785.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 14 | - |
| 12 | g8785.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 18 | - |
| 8 | g8785.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 327 | - |
| 7 | g8785.t4 | ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 25 | 327 | 26.713 |
| 4 | g8785.t4 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 33 | 312 | 5.62E-63 |
| 5 | g8785.t4 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
