Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Beta-1,3-glucan-binding protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8785 g8785.t6 TSS g8785.t6 33130039 33130039
chr_2 g8785 g8785.t6 isoform g8785.t6 33130062 33131379
chr_2 g8785 g8785.t6 exon g8785.t6.exon1 33130062 33130248
chr_2 g8785 g8785.t6 exon g8785.t6.exon2 33130306 33130591
chr_2 g8785 g8785.t6 exon g8785.t6.exon3 33130735 33130977
chr_2 g8785 g8785.t6 cds g8785.t6.CDS1 33130848 33130977
chr_2 g8785 g8785.t6 exon g8785.t6.exon4 33131028 33131199
chr_2 g8785 g8785.t6 cds g8785.t6.CDS2 33131028 33131199
chr_2 g8785 g8785.t6 exon g8785.t6.exon5 33131253 33131379
chr_2 g8785 g8785.t6 cds g8785.t6.CDS3 33131253 33131379
chr_2 g8785 g8785.t6 TTS g8785.t6 33131409 33131409

Sequences

>g8785.t6 Gene=g8785 Length=1015
ATGAACGTTTTTAGAGGCATTTTATTTTTATTTTTTGCAATAAATGTAAATTGTCAATGC
AAAAAATCTATAACAACAGTCATTGGATCGAAAAAACCGTCACAAATTTGTTCTGGTCAA
TTGATTTTTGAGGATAATTTTGATAATGTTGATAGATCAAAATGGAAATTTGAAAATACA
CTAGCTGGTGGTGGAAATTGGGAATTTCAATGGTATCCAGGCTATGATTCTCGAAATGCA
TTCACAAAAAATGGGAAATTGCATATTGCACCAACAACAACAGCAAGTATCTATGGTGAA
GACTTTTTAACACATGCAAGAGTTCAAATTCCAACAAATCAATGTACATGGTCTGCCGAC
TATGGCTGTGATAGACAGGGAACAGTTGATCATATTATAAATCCTATAAGAAGTGCAAGA
ATGGATACTCGTGATTCATTTTCTTTTAAATATGGTGTAATGGAAATAAGAGCATTTAAT
GGAATCAAGAGGAAATCGTCAACTTTATCAAGGAAATACAAACATAGGAATTGAACAAAT
TTCAACTACTTTACATTTTGGCCCTGATTACAATCATAATGGCTTTATGACAGCTCATTA
TGAAAAGAATAGAATTCCAGGCTACAATCAAGATTTTCATCTTTATAAATTAGAATGGAA
TTCTTCACAAATTAAATTCTACATTGATAATCAAATTTATGCAACTGTAAATGCTGGAAA
TGGTTTTTGGGATCGTGGTGGTTTCTCTGGTCAATCTAATCCATGGGCAAATGCTAGTAA
AATGGCACCATTTGATCAAGAATTTTTCATCATCATGAATTTAGCTGTTGGAGGAACAAA
TGGATTTTTTCCAGACGATACAGTGAATAGACCGAATAAAAAACCTTGGAAGAATAATAG
TGAAAGAGCAGCAGCTGATTTTTGGAATAATAAAAATGATTGGCTACCAGGATGGAATTT
AGGAAATGACGATGCCCACTTGCAAGTTGACTATGTTAGAGTTTGGGCACTTTGA

>g8785.t6 Gene=g8785 Length=142
MTAHYEKNRIPGYNQDFHLYKLEWNSSQIKFYIDNQIYATVNAGNGFWDRGGFSGQSNPW
ANASKMAPFDQEFFIIMNLAVGGTNGFFPDDTVNRPNKKPWKNNSERAAADFWNNKNDWL
PGWNLGNDDAHLQVDYVRVWAL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g8785.t6 PANTHER PTHR10963:SF55 EXTRACELLULAR AGARASE 4 141 0.0000000
3 g8785.t6 PANTHER PTHR10963 GLYCOSYL HYDROLASE-RELATED 4 141 0.0000000
1 g8785.t6 Pfam PF00722 Glycosyl hydrolases family 16 11 45 0.0000005
5 g8785.t6 ProSiteProfiles PS51762 Glycosyl hydrolases family 16 (GH16) domain profile. 1 142 12.3260000
4 g8785.t6 SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 12 140 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed