General information for g8785.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Beta-1,3-glucan-binding protein.
Parent gene
- The parent gene g8785 is located on chr_2: 33130735..33131379 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8785 | g8785.t7 | TSS | g8785.t7 | 33130039 | 33130039 |
| chr_2 | g8785 | g8785.t7 | isoform | g8785.t7 | 33130062 | 33131379 |
| chr_2 | g8785 | g8785.t7 | exon | g8785.t7.exon1 | 33130062 | 33130659 |
| chr_2 | g8785 | g8785.t7 | cds | g8785.t7.CDS1 | 33130539 | 33130659 |
| chr_2 | g8785 | g8785.t7 | exon | g8785.t7.exon2 | 33130711 | 33130977 |
| chr_2 | g8785 | g8785.t7 | cds | g8785.t7.CDS2 | 33130711 | 33130977 |
| chr_2 | g8785 | g8785.t7 | exon | g8785.t7.exon3 | 33131028 | 33131199 |
| chr_2 | g8785 | g8785.t7 | cds | g8785.t7.CDS3 | 33131028 | 33131199 |
| chr_2 | g8785 | g8785.t7 | exon | g8785.t7.exon4 | 33131253 | 33131379 |
| chr_2 | g8785 | g8785.t7 | cds | g8785.t7.CDS4 | 33131253 | 33131379 |
| chr_2 | g8785 | g8785.t7 | TTS | g8785.t7 | 33131409 | 33131409 |
Sequences
>g8785.t7 Gene=g8785 Length=1164
ATGAACGTTTTTAGAGGCATTTTATTTTTATTTTTTGCAATAAATGTAAATTGTCAATGC
AAAAAATCTATAACAACAGTCATTGGATCGAAAAAACCGTCACAAATTTGTTCTGGTCAA
TTGATTTTTGAGGATAATTTTGATAATGTTGATAGATCAAAATGGAAATTTGAAAATACA
CTAGCTGGTAATTTTTAGAAATTTAAAAAATGTACTTATTTATAACAAATTTACATTTAC
ATAGGTGGTGGAAATTGGGAATTTCAATGGTATCCAGGCTATGATTCTCGAAATGCATTC
ACAAAAAATGGGAAATTGCATATTGCACCAACAACAACAGCAAGTATCTATGGTGAAGAC
TTTTTAACACATGCAAGAGTTCAAATTCCAACAAATCAATGTACATGGTCTGCCGACTAT
GGCTGTGATAGACAGGGAACAGTTGATCATATTATAAATCCTATAAGAAGTGCAAGAATG
GATACTCGTGATTCATTTTCTTTTAAATATGGTGTAATGGAAATAAGAGCAAAATTACCA
TCTGGCGATTGGTTATGGCCAGCATTATGGATGATGCCAAAAAATAGTGTCTATGGAACA
TGGCCTCGATCAGGTGAGATAGATTTAATGGAATCAAGAGGAAATCGTCAACTTTATCAA
GGAAATACAAACATAGGAATTGAACAAATTTCAACTACTTTACATTTTGGCCCTGATTAC
AATCATAATGGCTTTATGACAGCTCATTATGAAAAGAATAGAATTCCAGGCTACAATCAA
GATTTTCATCTTTATAAATTAGAATGGAATTCTTCACAAATTAAATTCTACATTGATAAT
CAAATTTATGCAACTGTAAATGCTGGAAATGGTTTTTGGGATCGTGGTGGTTTCTCTGGT
CAATCTAATCCATGGGCAAATGCTAGTAAAATGGCACCATTTGATCAAGAATTTTTCATC
ATCATGAATTTAGCTGTTGGAGGAACAAATGGATTTTTTCCAGACGATACAGTGAATAGA
CCGAATAAAAAACCTTGGAAGAATAATAGTGAAAGAGCAGCAGCTGATTTTTGGAATAAT
AAAAATGATTGGCTACCAGGATGGAATTTAGGAAATGACGATGCCCACTTGCAAGTTGAC
TATGTTAGAGTTTGGGCACTTTGA
>g8785.t7 Gene=g8785 Length=228
MDTRDSFSFKYGVMEIRAKLPSGDWLWPALWMMPKNSVYGTWPRSGEIDLMESRGNRQLY
QGNTNIGIEQISTTLHFGPDYNHNGFMTAHYEKNRIPGYNQDFHLYKLEWNSSQIKFYID
NQIYATVNAGNGFWDRGGFSGQSNPWANASKMAPFDQEFFIIMNLAVGGTNGFFPDDTVN
RPNKKPWKNNSERAAADFWNNKNDWLPGWNLGNDDAHLQVDYVRVWAL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8785.t7 | PANTHER | PTHR10963:SF55 | EXTRACELLULAR AGARASE | 1 | 227 | 0.00 |
| 3 | g8785.t7 | PANTHER | PTHR10963 | GLYCOSYL HYDROLASE-RELATED | 1 | 227 | 0.00 |
| 1 | g8785.t7 | Pfam | PF00722 | Glycosyl hydrolases family 16 | 6 | 131 | 0.00 |
| 5 | g8785.t7 | ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 1 | 228 | 26.48 |
| 4 | g8785.t7 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 4 | 226 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
