General information for g8786.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Beta-1,3-glucan-binding protein.
Parent gene
- The parent gene g8786 is located on chr_2: 33132752..33135423 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8786 | g8786.t1 | TSS | g8786.t1 | 33131611 | 33131611 |
| chr_2 | g8786 | g8786.t1 | isoform | g8786.t1 | 33131652 | 33132752 |
| chr_2 | g8786 | g8786.t1 | exon | g8786.t1.exon1 | 33131652 | 33132752 |
| chr_2 | g8786 | g8786.t1 | cds | g8786.t1.CDS1 | 33131652 | 33132752 |
| chr_2 | g8786 | g8786.t1 | TTS | g8786.t1 | 33133037 | 33133037 |
Sequences
>g8786.t1 Gene=g8786 Length=1101
ATGAAGAGTGCAGTTCTAGGAATAATTTTGAGTTTGATAAGCTCAAATTTAGCTTGTACA
ATCACTAGGCTTGATGGTACTCATATACCCACAAATTTCTGTGCTGGAGATTTAATTTTT
GAAGATAATTTCAATAATATTGATAGCTCAAAATGGTTCTTTGAGAATACTCTTGCTGGA
GGTGGAAATTGGGAATTTCAATGGTATCCAGGTCATGATGCAAACAATCTTCAAGTTAGG
AATAATGTCCTTCATTTTATACCAACCCTAACAAGCGATATGTTTGGTGTCAGTTTTCTT
ACAACTGGTAGAGTAATAATTCCACCAGAGCAATGCACTCAAGCTGATTGGTATGGATGT
GATCGTCAAGGTACACCTGATAATATTATCAATCCAATAAGAAGCACAAGAATTGATACA
AGACGATCATTTGGATTTCGTTATGGAGAACTTGAAATTCGTGCAAAAATGCCACGAGGT
GATTGGTTATGGCCAGCATTATGGTTAATGCCGATGCACAACGTTTATGGCGGTTGGCCA
AGATCAGGAGAAATAGATTTAATGGAAATGCGTGGCAATGCTAATCTTTTTAGTGGAAGT
GTTCATGTTGGTGTACAACAAGTTGGTCATACAATGCACTTTGGTCCTGCTTGGGATGTT
AATGGCTGGCCAACTACACATTCGACTAGAAATCAAATTCCAGGTTTCGATGAAAACTTC
CATGTTTACAGAATGAGATGGACTGATAGCGGAATTACATTCTTCATTGATGGAGTTCAA
ACAGGAAATGTTGCTGCTGGAACAGGCTTTTGGGATCGTGGTGGTTTTCATAATTCTGGT
CATGCTAATCCTTGGGCTGGAGCTTCAGTAATGGCACCATTTGATCAAGAATTTTATATC
ATTATGAATTTAGCTGTTGGTGGCACTAATTATTTCTCTGACAGTTTCGTAAATTCACCA
AATCCAAAACCATGGCATAACACAAGTCCTCGTGCAGCAGCAGACTTTTGGGAGCATCGT
CATTGGTGGCTTCCTACTTGGAATATGGGAACAGAGCAATCACACATGCAGATCGATTAT
GTTCGCGTGTACGCTGTTTAA
>g8786.t1 Gene=g8786 Length=366
MKSAVLGIILSLISSNLACTITRLDGTHIPTNFCAGDLIFEDNFNNIDSSKWFFENTLAG
GGNWEFQWYPGHDANNLQVRNNVLHFIPTLTSDMFGVSFLTTGRVIIPPEQCTQADWYGC
DRQGTPDNIINPIRSTRIDTRRSFGFRYGELEIRAKMPRGDWLWPALWLMPMHNVYGGWP
RSGEIDLMEMRGNANLFSGSVHVGVQQVGHTMHFGPAWDVNGWPTTHSTRNQIPGFDENF
HVYRMRWTDSGITFFIDGVQTGNVAAGTGFWDRGGFHNSGHANPWAGASVMAPFDQEFYI
IMNLAVGGTNYFSDSFVNSPNPKPWHNTSPRAAADFWEHRHWWLPTWNMGTEQSHMQIDY
VRVYAV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8786.t1 | PANTHER | PTHR10963:SF55 | EXTRACELLULAR AGARASE | 30 | 365 | 2.0E-88 |
| 3 | g8786.t1 | PANTHER | PTHR10963 | GLYCOSYL HYDROLASE-RELATED | 30 | 365 | 2.0E-88 |
| 1 | g8786.t1 | Pfam | PF00722 | Glycosyl hydrolases family 16 | 134 | 261 | 1.9E-16 |
| 8 | g8786.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 9 | g8786.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 10 | g8786.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 11 | g8786.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 7 | g8786.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 366 | - |
| 13 | g8786.t1 | ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 22 | 366 | 25.902 |
| 4 | g8786.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 30 | 365 | 4.54E-62 |
| 6 | g8786.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 12 | g8786.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 5 | g8786.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K20692 (gram-negative bacteria-binding protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
