General information for g8790.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein phosphatase 1 regulatory subunit 12A.
Parent gene
- The parent gene g8790 is located on chr_2: 33149775..33150829 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8790 | g8790.t1 | isoform | g8790.t1 | 33145972 | 33150829 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon1 | 33145972 | 33146121 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS1 | 33145972 | 33146121 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon2 | 33146179 | 33146276 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS2 | 33146179 | 33146276 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon3 | 33146333 | 33146558 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS3 | 33146333 | 33146558 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon4 | 33146801 | 33147409 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS4 | 33146801 | 33147409 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon5 | 33147597 | 33147762 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS5 | 33147597 | 33147762 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon6 | 33148047 | 33148358 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS6 | 33148047 | 33148358 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon7 | 33148479 | 33148565 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS7 | 33148479 | 33148565 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon8 | 33148716 | 33148895 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS8 | 33148716 | 33148895 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon9 | 33149281 | 33149362 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS9 | 33149281 | 33149362 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon10 | 33149426 | 33149539 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS10 | 33149426 | 33149539 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon11 | 33149775 | 33149885 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS11 | 33149775 | 33149885 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon12 | 33150029 | 33150672 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS12 | 33150029 | 33150672 |
| chr_2 | g8790 | g8790.t1 | exon | g8790.t1.exon13 | 33150741 | 33150829 |
| chr_2 | g8790 | g8790.t1 | cds | g8790.t1.CDS13 | 33150741 | 33150829 |
| chr_2 | g8790 | g8790.t1 | TSS | g8790.t1 | NA | NA |
| chr_2 | g8790 | g8790.t1 | TTS | g8790.t1 | NA | NA |
Sequences
>g8790.t1 Gene=g8790 Length=2868
ATGGTGGAATTTCTCGTCACACATGGTGCTAATGTTAATCGTAAAGATAATGAGGGTTGG
ACACCTCTTCATGCTACATCTTCATGCGGAATTGTTAGTATAGCTAGATATTTAATTGAA
AACGGTGCCGATTTGGCGTCGGTAAATAGTGATGGAGAACTACCAATTGATATTGCTGGT
ACAAATGCTATGGCAGATTTACTTCAACATTATATTGACGAACAAGGAATTGATTGTGAT
GAAGCAAGACAGCAAGAAGAAAAACTTATGTTATCAGACGCTAAAAAATGGTTACGATCA
GATGCTAGTGAAGCAGATCGACCACATCCAAAAACGGGTGCTACCGCTCTTCATGTGGCA
GCTGCTAAAGGTTACACAAAAGTTTTAAGTCTTTTATTGGCTGGACGGGCTGATGTAGAC
CGTCAGGATAATGACGGATGGACACCATTGCATGCTGCTTGTTATTGGGGTAAAAAAGAA
GCTGCACAAATGCTTATCGCATCAATGGCCGATATGGATATTCTAAATTATTCAAATCAA
ACTTGTATAGAAATTGCCCCAAAAGAAATGATCCCATGGCTTGAAGAATTAAGGAAGAAC
AATAAACGTACAAAGCGTCGACCAGTCAGTCAAATTAGAATAAGTGATAATAATATAGAT
AACAATATCGAATCACCACCTAAAGTCATTCGTGTTGAATTAAAATCACCTGCAGAACAA
CAAACAACTAATGAATGTGATTTTGAAAATTCTGAATCAGATATGGAAGATGAAGAAGAG
GAGGAGGATGATAATGAAGAAGAAGAAGAAGAAGAAAGTGAAGAAGAGAGTGAAAGTGCT
GAAGAAGAGCAAAAACAAACAAATAAAATGACAACCGCAAAAGATCAGATGCAACTGCCA
TTAACAAAGGAGAACGATTCCATGGATGACATAAAACAGAAGCAAGACAATCCAACACAA
GTTCCTGTCAAAGAAAACCAAACAAACAATGATTCAGAAGTGATTCTTAGACGAACGCAA
AGTTTTGAAAATGACGAAAAATTTTATCAAAAATACATCGAATTACGAGCGCGAATCAAA
GCAAATTCATGCCCTGCACTGCCTGCTACTCAAATAACTATTGCGAAAGATGATAGTAAT
AAGGAAAGTGTTACAAAATCTTCAACGAATTTCATTATTCAACGATCAGCATCATTAAAG
GATCATAGAAGTCAATTAAGTAACAGAAAAATTGATGAGAAAACTCCACCTACAAGTCCA
ACTACACCGACAACACCAGCTTCAACACCTTCAGGACATCTCAGAAGTTATGAGAAACCA
ACACCAAAACAAGAATCAGCAGTAGGAGCTTTAGTATCAGCAAATCAAAATATAATTGAT
TTGATTGCGAGACGCTATAGTTCATCAGTTGATAAATCAAGTGATGTAATGTCTACTTCA
AATAATGCTCGAAACAATTCAATAACTGATGTATCAATTAAGATGCCAGTAAAACAAGCA
ATGGATGAATCACAAAATAATTTACAACCAGAGCAGCCTACCACGCCACAAACTCCAACA
AGTCCTTCTACAATGCTCAATAAATTATCTCCAGGGAATATTTTCAAAAATATTTTCAAG
TCCTTTGTGCCTCCAACTCGAGACGAAGAAAGCGAAACCCAACGAAAAGCTCATGCAAAG
AGAGTTCGTGAGACACGAAGATCTACTCAAGGAGTAACACTTGATGAAATCAAAAGTGCC
GAGCAGTTAGTCAAAATGAAAAATGCTAGTAATAGCAATGGAAATACGGAAAATACAAAT
AGTAGTGAGCTTAATGAAAGATTATCAGACACAACAACGATAGCAGCTGAAACGTCGATT
ATGAAAACAGATGATTCGTCAATAAATGAAGAAGTTAATGTAAATTATACAATTAGTTCA
CCACTTCGAAAGACATTGCGTTCAAGTGTTGATAAAGAAGATGAAGAAAATGATCAAAAA
ATATCTGCAACATTTACAATTTCACCACCATCATCACGAACAAACGTAAATTCAATAAGT
CAACTTGCTAATCGATTAGAAAAAGGTTTAGACCTCGAAACAGAAGTTTCAGCAACGATT
AACGTGCCTCTTATATCACCGACAAAGAATAATGCTGACTCTTGTGAAAAACTCAAAAAG
ACTGATCCTCCCGTACCACAACCTAGATCACTCTTTGATATTGACAATGCAACGTCAATA
AAATTAGCTGATAAATTACAAGAAGAAGCTAAGAAATGTGATGTTAATACGGTAAGTGAT
GAGCCATCACCGCTCAATCACTTGACTGAACCTCTTCCGCCTTCTCCAATTCACCATACA
ATTTTTGGCGAGCGTAGACCATCTTGGCGCTTAAAAACTGATTATAACAATAAGTTTAAA
TTAGAGGATACATCACAATCATCAACATCAACGGGAAATTCAACACAGCAACCGCAAACT
AATTCAACCAATGGTATAGATTTATCGAAAGTAACAACTAATACACCAGTCGTGTCGACT
CGAAGACAAAATTCTTCTGAAAATTCAGTTCCTAATGATACTAGTTCGGCAGTCACTAAA
GAAACGCCAGTGACACCAAACCGATCAGATGATGATAAAGAAAATGACAAAGAAAATGAT
AGTCGATCTGGATTAGCAATTCATCGAAGAAGACGTCCAAAGAGACGTTCTACAGGTGTT
GTACATGTTGATATGGAGGAGATTGATCCTGAATATCGTCAAGAATCACCAGTAGAAGAT
AATAATAAGGATACGGTAAGTAGGCTATTTATAAATAAAACTCTCGAAATAAAAATAATT
GAAACTTCCTCGAGTGTAATTTTAGAACACATTCGACAGGGATTTTAA
>g8790.t1 Gene=g8790 Length=955
MVEFLVTHGANVNRKDNEGWTPLHATSSCGIVSIARYLIENGADLASVNSDGELPIDIAG
TNAMADLLQHYIDEQGIDCDEARQQEEKLMLSDAKKWLRSDASEADRPHPKTGATALHVA
AAKGYTKVLSLLLAGRADVDRQDNDGWTPLHAACYWGKKEAAQMLIASMADMDILNYSNQ
TCIEIAPKEMIPWLEELRKNNKRTKRRPVSQIRISDNNIDNNIESPPKVIRVELKSPAEQ
QTTNECDFENSESDMEDEEEEEDDNEEEEEEESEEESESAEEEQKQTNKMTTAKDQMQLP
LTKENDSMDDIKQKQDNPTQVPVKENQTNNDSEVILRRTQSFENDEKFYQKYIELRARIK
ANSCPALPATQITIAKDDSNKESVTKSSTNFIIQRSASLKDHRSQLSNRKIDEKTPPTSP
TTPTTPASTPSGHLRSYEKPTPKQESAVGALVSANQNIIDLIARRYSSSVDKSSDVMSTS
NNARNNSITDVSIKMPVKQAMDESQNNLQPEQPTTPQTPTSPSTMLNKLSPGNIFKNIFK
SFVPPTRDEESETQRKAHAKRVRETRRSTQGVTLDEIKSAEQLVKMKNASNSNGNTENTN
SSELNERLSDTTTIAAETSIMKTDDSSINEEVNVNYTISSPLRKTLRSSVDKEDEENDQK
ISATFTISPPSSRTNVNSISQLANRLEKGLDLETEVSATINVPLISPTKNNADSCEKLKK
TDPPVPQPRSLFDIDNATSIKLADKLQEEAKKCDVNTVSDEPSPLNHLTEPLPPSPIHHT
IFGERRPSWRLKTDYNNKFKLEDTSQSSTSTGNSTQQPQTNSTNGIDLSKVTTNTPVVST
RRQNSSENSVPNDTSSAVTKETPVTPNRSDDDKENDKENDSRSGLAIHRRRRPKRRSTGV
VHVDMEEIDPEYRQESPVEDNNKDTVSRLFINKTLEIKIIETSSSVILEHIRQGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8790.t1 | Coils | Coil | Coil | 248 | 290 | - |
| 7 | g8790.t1 | Gene3D | G3DSA:1.25.40.20 | - | 1 | 75 | 9.6E-20 |
| 6 | g8790.t1 | Gene3D | G3DSA:1.25.40.20 | - | 76 | 209 | 3.5E-40 |
| 22 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 336 | - |
| 18 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 281 | - |
| 17 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 336 | - |
| 12 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 447 | - |
| 13 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 523 | - |
| 20 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 607 | - |
| 16 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 571 | - |
| 19 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 607 | - |
| 15 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 783 | - |
| 14 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 801 | 864 | - |
| 21 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 801 | 899 | - |
| 23 | g8790.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 886 | - |
| 3 | g8790.t1 | PANTHER | PTHR24179 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 | 1 | 925 | 2.6E-141 |
| 4 | g8790.t1 | PANTHER | PTHR24179:SF21 | MYOSIN BINDING SUBUNIT, ISOFORM O | 1 | 925 | 2.6E-141 |
| 2 | g8790.t1 | Pfam | PF13857 | Ankyrin repeats (many copies) | 5 | 59 | 1.0E-8 |
| 1 | g8790.t1 | Pfam | PF13637 | Ankyrin repeats (many copies) | 115 | 166 | 2.2E-14 |
| 24 | g8790.t1 | ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1 | 186 | 36.1 |
| 27 | g8790.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 18 | 50 | 11.968 |
| 25 | g8790.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 112 | 144 | 12.77 |
| 26 | g8790.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 145 | 177 | 11.167 |
| 11 | g8790.t1 | SMART | SM00248 | ANK_2a | 18 | 47 | 0.2 |
| 9 | g8790.t1 | SMART | SM00248 | ANK_2a | 112 | 141 | 0.012 |
| 10 | g8790.t1 | SMART | SM00248 | ANK_2a | 145 | 174 | 8.1E-5 |
| 5 | g8790.t1 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 1 | 187 | 1.2E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K06270 (protein phosphatase 1 regulatory subunit 12A)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
