General information for g8818.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8818 is located on chr_2: 33331520..33333955 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8818 | g8818.t1 | isoform | g8818.t1 | 33331520 | 33333955 |
| chr_2 | g8818 | g8818.t1 | exon | g8818.t1.exon1 | 33331520 | 33333955 |
| chr_2 | g8818 | g8818.t1 | cds | g8818.t1.CDS1 | 33331520 | 33333955 |
| chr_2 | g8818 | g8818.t1 | TSS | g8818.t1 | NA | NA |
| chr_2 | g8818 | g8818.t1 | TTS | g8818.t1 | NA | NA |
Sequences
>g8818.t1 Gene=g8818 Length=2436
ATGTTACCTAGCAGTTATGTACAAATTGTAGATAATAATGATGAAAAGGTGGTGGATGAT
AATCAAGCACTGCCGCCACCACAACAACAGCAGCAACAACAACAAACAACATGTCTCGAC
GAAACATCTTGCCCCTTTGCACAACAGCAGCAGCAGCAACAGGAGATTAGAGGCCGATCA
TCCTCACTAGATAAACATCGTAGTAGCTTTAGTATGAGAATGATTGGTAGTCAATCTACA
CTAAATACACTCTGCAGTCATCATAGCATGAGTAAAGGGAGCATCCATCAAAACGCCTTC
TATAACCGACTATATAATTCAGATCCCAATACTAATACAATAGATTCACACATCACAGAT
GATTCTGAATATTTATCAAATTATGCACATATTAAGCATAGCCATCGACATCCGCACTAT
CATTTGAGAAGGCAATCACAACCAGATGAGCCACGTTTTATGATGTCTCGTAATTCTAGT
GTTAAAAGTTTCACATCACAATGCTATATTAATCCAGAATATTTCTACGAAATTCGTCCT
TCAACATCATGTGATAGCAAAGCATCATTAATCTCACGTAAACCTTCTCAGAATCAAATT
ATGTTACTTAATTCAGAATTACAATTATTGGAAGGCCTTCGTGAAGGACTCTCAAATTCT
TATCCTAAAATAAATTATATTGACAAACATTATTTGTCATTAAATGATGATGCACCACCA
TTATTACATCATCGGCCAGTTCATGATTACGATAATGGTGATGAAGAGGAAGAGGAAGAA
ATTGATGAAGAAGAAGAAGAAGTAGAAGAGGAAGAAACTTCATCAACTTCATCTGATGCA
AGTGAATTTCATGAAAATAAAACTTCCACACTTGATCGATCTAAAGCATCTTATGTTCAT
ATGCATCGGCATGATCGTCCTCTTACAATTCCAATGTTTAGTGAAACTGACTCTTATTCA
ACTGTAAATGATGAAATTACACAGTTAGTTAGTAAACATTTGTCAAATTCGATAAAGCAA
CTAGTCGCACGACAACTCACTGATACTGACTTTTATGCACTGCCATTAAGACGTCGACAT
AGCTGCGATAGTTCAGAACTCTCTGATATACAAATTCCAGACTTATTCAATTCACCATCA
CGCATCAAATGGAATTTCTTAACTGGTTTGCCCGATCATAGTCGAAGTCAAAGTCAAATT
TATAGTAGCGATTATAAGACTGACGAGGACGATGATGAACAAAAGCAAAAACAATATGAG
AAAAGAGTGGAAGCAATGATGAAAAGGAAATCATCTTCACTTGATCCAAAATATCAAGCA
CATCATCGTGAGATTGAAATTATGCCAATATGGCGAGCAAATAGCTATGGACGAGCACGT
GATGCAATGGTCGCACATCACAGTTGTTGCGAAGCTCATCGTAGAATGCATACTATCAGT
ACTCGTGATGCTGAAGTGACGACTGACAGAAATCAAGAGGAAAAATATCCGAATGGAAAT
GTGAAAGAAGAAGATACAGGCGTTTACGAATTTGAGTTGTGTACGAAAGAAAATTGTGAA
TATCTGTCAAAAAGTCAATTGATATCGACTGAAGAAAAGAATCTCTTGAATAATGAAATG
CCAGGTCTACTACCTTGCACAAAAAATATCAACCTTAAACATAACAAATTCAAAATGAAA
AAGACTAAAAAGACAAAGAGCAAATCTTCATCACAAAAGGAAAATCGTGAGCAGATAGAA
GATCAAATGATTATGTGGAATAAAATAAATTTAAATCATTTGATGAAAAAAGACAGTTGC
AATATAAATAGTGTTAATTTCAAGCCTCATTCAAGTTCATCATCGTCAAGTTCGATAAAT
AATGGAGGAGGTATTAGTAATGAAGCGGGAAATCGTAATCTAAAGAAACGACAAAAAGCT
TGTGATAAACTTTTTAATGCAACCACAACCGAATCATCTTCAACACAACAGCAGCATCGC
CATTTACAGCCACAGCAATCGTTGAATGTTGCATCGCTCATATTAGCTTCATTCAATTCA
ACTCAAGCTCGCATTAGAAACGATGGTGGAATTTACTTTAGCAATCCTGACCTGTCAAAT
ATTCCCGCAGATCTAAGATCAATGAATTTCATAAATAACAACAGCTGCCAATTTATTAAT
AACGATTTAAGAAGTAATGTAAATAGTACTAATAATAATAATAATAATAGTTCTAGCCGT
AGTAGTCGATTCGATTCGAGATTTAACAATTTAAATTCAGCAACAAATTATTTGTTAGAA
TCTATAAACAGTAATAATAATAATTCTGAAATAATGCAACAGCAAGATATAAGACGACGC
TTACGATATATTAATCTTCATGGTATGTTAAGACGCGCTCAAAAACGAGCTAAAAAATAT
TTAAATTCAATATCATTCGCTTCTTCAAGAAAATGA
>g8818.t1 Gene=g8818 Length=811
MLPSSYVQIVDNNDEKVVDDNQALPPPQQQQQQQQTTCLDETSCPFAQQQQQQQEIRGRS
SSLDKHRSSFSMRMIGSQSTLNTLCSHHSMSKGSIHQNAFYNRLYNSDPNTNTIDSHITD
DSEYLSNYAHIKHSHRHPHYHLRRQSQPDEPRFMMSRNSSVKSFTSQCYINPEYFYEIRP
STSCDSKASLISRKPSQNQIMLLNSELQLLEGLREGLSNSYPKINYIDKHYLSLNDDAPP
LLHHRPVHDYDNGDEEEEEEIDEEEEEVEEEETSSTSSDASEFHENKTSTLDRSKASYVH
MHRHDRPLTIPMFSETDSYSTVNDEITQLVSKHLSNSIKQLVARQLTDTDFYALPLRRRH
SCDSSELSDIQIPDLFNSPSRIKWNFLTGLPDHSRSQSQIYSSDYKTDEDDDEQKQKQYE
KRVEAMMKRKSSSLDPKYQAHHREIEIMPIWRANSYGRARDAMVAHHSCCEAHRRMHTIS
TRDAEVTTDRNQEEKYPNGNVKEEDTGVYEFELCTKENCEYLSKSQLISTEEKNLLNNEM
PGLLPCTKNINLKHNKFKMKKTKKTKSKSSSQKENREQIEDQMIMWNKINLNHLMKKDSC
NINSVNFKPHSSSSSSSSINNGGGISNEAGNRNLKKRQKACDKLFNATTTESSSTQQQHR
HLQPQQSLNVASLILASFNSTQARIRNDGGIYFSNPDLSNIPADLRSMNFINNNSCQFIN
NDLRSNVNSTNNNNNNSSSRSSRFDSRFNNLNSATNYLLESINSNNNNSEIMQQQDIRRR
LRYINLHGMLRRAQKRAKKYLNSISFASSRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8818.t1 | Coils | Coil | Coil | 247 | 274 | - |
| 1 | g8818.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 67 | - |
| 4 | g8818.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 58 | - |
| 6 | g8818.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 295 | - |
| 3 | g8818.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 276 | - |
| 7 | g8818.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 418 | - |
| 5 | g8818.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 418 | - |
| 2 | g8818.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 579 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed