Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose transporter type 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8819 g8819.t2 TTS g8819.t2 33340389 33340389
chr_2 g8819 g8819.t2 isoform g8819.t2 33340461 33350380
chr_2 g8819 g8819.t2 exon g8819.t2.exon1 33340461 33340600
chr_2 g8819 g8819.t2 exon g8819.t2.exon2 33340659 33340883
chr_2 g8819 g8819.t2 exon g8819.t2.exon3 33343394 33343520
chr_2 g8819 g8819.t2 exon g8819.t2.exon4 33343610 33343699
chr_2 g8819 g8819.t2 cds g8819.t2.CDS1 33343653 33343699
chr_2 g8819 g8819.t2 exon g8819.t2.exon5 33343872 33344063
chr_2 g8819 g8819.t2 cds g8819.t2.CDS2 33343872 33344063
chr_2 g8819 g8819.t2 exon g8819.t2.exon6 33344137 33344415
chr_2 g8819 g8819.t2 cds g8819.t2.CDS3 33344137 33344415
chr_2 g8819 g8819.t2 exon g8819.t2.exon7 33344485 33344609
chr_2 g8819 g8819.t2 cds g8819.t2.CDS4 33344485 33344609
chr_2 g8819 g8819.t2 exon g8819.t2.exon8 33345003 33345259
chr_2 g8819 g8819.t2 cds g8819.t2.CDS5 33345003 33345259
chr_2 g8819 g8819.t2 exon g8819.t2.exon9 33350298 33350380
chr_2 g8819 g8819.t2 cds g8819.t2.CDS6 33350298 33350318
chr_2 g8819 g8819.t2 TSS g8819.t2 33350380 33350380

Sequences

>g8819.t2 Gene=g8819 Length=1518
ATAGTAAATTCATCAGTAAAGAAGGAAGATTCTTTAATTTTTTTTGAGTGGTGTACAACG
AAATGGCTGCTCTTTGGTTCGAGGGTTTAACTTTCTTCCTTACATACTCTATATTCGCTG
CCGTTTTGGGCATGCTTCAATTCGGTTACAATACCGGAGTGATAAATGCGCCAGAAATTA
ATATAGAAAACTTTATGAAAGACGTTTATAAGGATCGTTATGGCGAAGATATAAGCGAAG
AATTTATTCAACAATTGTATTCTGTGGCTGTGTCGATTTTTGCAATCGGTGGTATGCTCG
GTGGCTTTTGCGGTGGTTGGATAGCAAATCGTTTTGGACGAAAGGGAGGCCTATTATTGA
ATAATGTTCTCGGTATATCTGGTGCATGTTTGATGGGCTTCACAAAGTTTCTCAATTCAT
ACGAAGTGCTATTCCTGGGACGATTTATTATTGGAGTTAATTGTGGTTTAAATACATCAC
TAGTTCCAATGTATATATCTGAAATTGCGCCATTAAATTTACGTGGTGGTTTAGGTACTG
TTAATCAATTGGCTGTGACCATAGGTTTACTTCTCTCACAAGTGCTCGGCATTGAGCAAA
TATTAGGAACAAACGACGGATGGCCAGTATTATTAGGTTTAGCGGTGTGTCCAGCTATTC
TACAATTAATTTTATTACCGATTTGTCCCGAATCGCCGCGTTATTTATTGATTACAAAAC
AATGGGAGGAAGAAGCAAGAAAAGCTTTAAGAAGACTCCGAGCATCAAGTCAAGTAGAAG
AAGATATTGAGGAAATGCGAGCGGAAGAGCGTGCACAGCAATCAGAGAGCAGTATTTCAA
TTATGGAATTAATCTGTTCGCCAACCCTACGAGCACCTCTCATAATTGGAATTGTAATGC
AATTGAGTCAACAGTTGAGTGGTATCAATGCTGTAAGTATTTTATTATTCCACTTCACTC
TTCATGAGTTCCGGTCTTACTGAAGAGAATGCAAAGTTTGCAACAATAGGAATTGGCTGC
ATCATGGTTTTGATGACATTGGTGTCTATACCATTAATGGATAAAACAGGACGTCGCACT
TTACATTTATACGGTCTTGGAGGGATGTTTATTTTCTCAATATTCATTACCATTTCATTC
CTAATAAAGGCAAGAGTTTTTTGGTTATGTGCAGGAAATGATCGACTGGATGTCCTATCT
TTCGGTGGTTTCAACATTGGCGTTTGTTGTATTTTTCGCTGTTGGTCCGGGTTCCATTCC
TTGGATGATTACGGCCGAATTATTTTCACAAGGTCCACGACCAACAGCAATGGCCATAGC
AGTTTTAGTCAATTGGCTAGCGAACTTTGTAGTTGGCATTGGTTTTCCTAGCTTAAAGGC
TGCACTGGATAACTACACATTCTTGCCGTTTAGCGTATTCCTAGCAATATTTTGGATATT
TACATATAAGAAGGTGCCCGAGACAAAAAATAAGACATTTGAAGAAATTCTTGCACTATT
TCGTCATGGAAATGGAAG

>g8819.t2 Gene=g8819 Length=306
MAALWFEGLTFFLTYSIFAAVLGMLQFGYNTGVINAPEINIENFMKDVYKDRYGEDISEE
FIQQLYSVAVSIFAIGGMLGGFCGGWIANRFGRKGGLLLNNVLGISGACLMGFTKFLNSY
EVLFLGRFIIGVNCGLNTSLVPMYISEIAPLNLRGGLGTVNQLAVTIGLLLSQVLGIEQI
LGTNDGWPVLLGLAVCPAILQLILLPICPESPRYLLITKQWEEEARKALRRLRASSQVEE
DIEEMRAEERAQQSESSISIMELICSPTLRAPLIIGIVMQLSQQLSGINAVSILLFHFTL
HEFRSY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8819.t2 Coils Coil Coil 235 255 -
7 g8819.t2 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 6 300 4.2E-86
2 g8819.t2 PANTHER PTHR23503 - 9 292 4.4E-142
4 g8819.t2 PRINTS PR00171 Sugar transporter signature 24 34 4.7E-12
3 g8819.t2 PRINTS PR00171 Sugar transporter signature 124 143 4.7E-12
5 g8819.t2 PRINTS PR00171 Sugar transporter signature 283 293 4.7E-12
1 g8819.t2 Pfam PF00083 Sugar (and other) transporter 18 293 1.4E-77
11 g8819.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
16 g8819.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 29 -
14 g8819.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 30 64 -
21 g8819.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 65 88 -
12 g8819.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 89 96 -
18 g8819.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 97 117 -
15 g8819.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 118 122 -
17 g8819.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 123 145 -
10 g8819.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 146 156 -
20 g8819.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 157 175 -
13 g8819.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 176 186 -
19 g8819.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 187 207 -
9 g8819.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 208 306 -
28 g8819.t2 ProSitePatterns PS00217 Sugar transport proteins signature 2. 129 154 -
29 g8819.t2 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile. 16 306 28.775
6 g8819.t2 SUPERFAMILY SSF103473 MFS general substrate transporter 15 294 3.92E-33
27 g8819.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -
23 g8819.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 66 88 -
22 g8819.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 95 114 -
24 g8819.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 124 146 -
26 g8819.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 155 177 -
25 g8819.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 187 209 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0016021 integral component of membrane CC
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed