Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g882 g882.t1 isoform g882.t1 6657717 6658424
chr_3 g882 g882.t1 exon g882.t1.exon1 6657717 6658424
chr_3 g882 g882.t1 cds g882.t1.CDS1 6657717 6658424
chr_3 g882 g882.t1 TSS g882.t1 NA NA
chr_3 g882 g882.t1 TTS g882.t1 NA NA

Sequences

>g882.t1 Gene=g882 Length=708
ATGGAGCAAAAATTAATTGGAGAATTTACAAAAAATTTCAACTGGAGATGTACTAGAGAA
AATTATACTTATCAAGTCACAAATCAAACTATATCAAATCAAAACATTTCGAAAGTAAAA
GGAAGTCATAAATTTGGCAAAACTAATAAGGACGTATGTGGAGTTTTGTTCCAATTTTGC
AATATCAAAGAAATTCCAAAAGGTTTAACAAAAATTTTCCCAAATTTGAAATACCTTGGA
ATTGTAAATTCCAATTTGAAAATTGTAACACGAAATGATCTGAAAGAATTTACAAATTTG
GAAATTTTGTACTTAAGAGGAAATGAGATTACTTACTTACCTGGAGATCTCCTTCAAGAT
TTAAATGATTTGGAAGTTTTTGTTGTGAGTGTTTCAAAAATAGAAATGATTGAACCAAAC
ATTTTTGATAATTGCAAGAAATTGAAGCATATTGATTTAAGAGGAAATTTTTGTATCGAT
AAATGCTTTAGTTCAGTTTATCCTGATTTGCAAAATGCAACAATGGAAGAAATTAAAGAA
AAATTGCAAAAAATTTATCCATTATGGGGAGAAAAAGTGAAGAATTTTAAAGGTGAAATT
ACTTCAGAAACCCTAAAATTGATAAAAGAAAATTCAAGTTATGTCAAAGCAATATACAGT
CTTATAATGGAAAAGAATTTCATTAAATCCAATTTTGAAAAATTTTAA

>g882.t1 Gene=g882 Length=235
MEQKLIGEFTKNFNWRCTRENYTYQVTNQTISNQNISKVKGSHKFGKTNKDVCGVLFQFC
NIKEIPKGLTKIFPNLKYLGIVNSNLKIVTRNDLKEFTNLEILYLRGNEITYLPGDLLQD
LNDLEVFVVSVSKIEMIEPNIFDNCKKLKHIDLRGNFCIDKCFSSVYPDLQNATMEEIKE
KLQKIYPLWGEKVKNFKGEITSETLKLIKENSSYVKAIYSLIMEKNFIKSNFEKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g882.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 6 226 0.000
2 g882.t1 PANTHER PTHR24366:SF122 KEKKON-2 60 174 0.000
3 g882.t1 PANTHER PTHR24366 IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS 60 174 0.000
1 g882.t1 Pfam PF13855 Leucine rich repeat 98 156 0.000
6 g882.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 99 120 7.281
4 g882.t1 SUPERFAMILY SSF52058 L domain-like 58 164 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed