General information for g883.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g883 is located on chr_3: 6663294..6664536 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g883 | g883.t1 | isoform | g883.t1 | 6663294 | 6664536 |
| chr_3 | g883 | g883.t1 | exon | g883.t1.exon1 | 6663294 | 6663405 |
| chr_3 | g883 | g883.t1 | cds | g883.t1.CDS1 | 6663294 | 6663405 |
| chr_3 | g883 | g883.t1 | exon | g883.t1.exon2 | 6663494 | 6664536 |
| chr_3 | g883 | g883.t1 | cds | g883.t1.CDS2 | 6663494 | 6664536 |
| chr_3 | g883 | g883.t1 | TSS | g883.t1 | NA | NA |
| chr_3 | g883 | g883.t1 | TTS | g883.t1 | NA | NA |
Sequences
>g883.t1 Gene=g883 Length=1155
ATGGAGCAAAAATTAATTGGAGAATTTACAAAAAATTTCAACTGGAGATGTACTAGAGAA
AATTACTTATCAAGTCACAAATCAAACTATATCAAATCAAAACATTTCGAAAGTTTAACA
AAAATTTTCCCAAATCTGAAATACCTTGGAATTGTAAATTCCAATTTGAAAATTGTAACA
CGAAATGATCTGAAAGAATTTACAAATTTGGAAATTTTGTTCTTAAGAGGAAATGAGATT
ACTTATTTACCTGGAGATCTCCTTCAAGATTTAAATGATTTGGAAGTTTTTGTTGTGAGC
GATTCAAAAATAGAAATGATTGAACCAAAAATTTTTGATAATTGCAAGAAATTGAAGCAT
ATTGATTTAAGAGGAAATTTTTGTATCGATAAATGCTTTAGTTCAGTTTATCCTGATTTG
CAAAATGCAACAATGGAAGAAATTAAAGAAAAATTGCAAAAAATTTATCCATTATGGGGA
GAAAAAGTGAAGAATTTTAAAGGTGAAATTACTTCGGAAACTCTAAAATTAATAAAAGAA
AATTTAAGGTATGTCAAAGCTATCAACAGTCTTAAAATGGAAAAGAATTTCATTAAATCC
GAGTTTCAAAAATTTAAAAATGAAAGTAAGAAAGAAATCGAAATTTTGAAAGAAAAATTA
TCTGAAATCGAAGCAAAAAATTCAAATTCTGAATCAAATTTTACTCAAGACTTCAAAACA
TTAATGGAAAATGAAGAACTGAAAGATATTACGATCAAAACTGAACTTGAAGAATTCAAA
GCTCACAAATTTGTGCTAGCAGCTCGCAGTCCAGTTTTTGCTGACATTATTAAGGAAAAT
GTCAATGCTGAATATTTGAATCTTCTTGATATCTCAAGTGATGTTTTTCGAGTTATTTTG
GACTTCATTTACACTGATGAACTTTCTGAAAACATTGACATTAACTTAATTGAATTATTA
ATAGCCAGTGAACGATTGAAAATTGAAAATTTGAAAAATGTCGCTGAAGAAAAACTGATG
GATGAAATCAATTCTGAAAATGCTTACGAATTTCTAAAATTGAGCACAAAAATTGAATGT
GAAAAATTGAGACAAAAGGCATTTGAAAAAATTAAGAAATATTATGAAGGTGAAAAAATC
GATCACGAAATTTAA
>g883.t1 Gene=g883 Length=384
MEQKLIGEFTKNFNWRCTRENYLSSHKSNYIKSKHFESLTKIFPNLKYLGIVNSNLKIVT
RNDLKEFTNLEILFLRGNEITYLPGDLLQDLNDLEVFVVSDSKIEMIEPKIFDNCKKLKH
IDLRGNFCIDKCFSSVYPDLQNATMEEIKEKLQKIYPLWGEKVKNFKGEITSETLKLIKE
NLRYVKAINSLKMEKNFIKSEFQKFKNESKKEIEILKEKLSEIEAKNSNSESNFTQDFKT
LMENEELKDITIKTELEEFKAHKFVLAARSPVFADIIKENVNAEYLNLLDISSDVFRVIL
DFIYTDELSENIDINLIELLIASERLKIENLKNVAEEKLMDEINSENAYEFLKLSTKIEC
EKLRQKAFEKIKKYYEGEKIDHEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g883.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 249 | 326 | 7.57579E-22 |
| 8 | g883.t1 | Coils | Coil | Coil | 188 | 233 | - |
| 6 | g883.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 155 | 5.0E-19 |
| 7 | g883.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 212 | 374 | 1.3E-34 |
| 2 | g883.t1 | PANTHER | PTHR26379:SF309 | OS02G0311150 PROTEIN | 179 | 369 | 1.1E-26 |
| 3 | g883.t1 | PANTHER | PTHR26379 | BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 | 179 | 369 | 1.1E-26 |
| 1 | g883.t1 | Pfam | PF00651 | BTB/POZ domain | 238 | 339 | 1.2E-21 |
| 13 | g883.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 69 | 90 | 7.003 |
| 14 | g883.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 248 | 312 | 17.107 |
| 10 | g883.t1 | SMART | SM00369 | LRR_typ_2 | 67 | 90 | 0.13 |
| 11 | g883.t1 | SMART | SM00369 | LRR_typ_2 | 91 | 114 | 120.0 |
| 12 | g883.t1 | SMART | SM00225 | BTB_4 | 248 | 343 | 7.3E-21 |
| 4 | g883.t1 | SUPERFAMILY | SSF52058 | L domain-like | 35 | 134 | 1.09E-16 |
| 5 | g883.t1 | SUPERFAMILY | SSF54695 | POZ domain | 228 | 341 | 1.7E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed