General information for g8842.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8842 is located on chr_2: 33487843..33488250 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8842 | g8842.t1 | isoform | g8842.t1 | 33487843 | 33488250 |
| chr_2 | g8842 | g8842.t1 | exon | g8842.t1.exon1 | 33487843 | 33488250 |
| chr_2 | g8842 | g8842.t1 | cds | g8842.t1.CDS1 | 33487843 | 33488250 |
| chr_2 | g8842 | g8842.t1 | TSS | g8842.t1 | 33489058 | 33489058 |
| chr_2 | g8842 | g8842.t1 | TTS | g8842.t1 | NA | NA |
Sequences
>g8842.t1 Gene=g8842 Length=408
ATGATCAAATCTTCATCAAAAATTATTCTTAAAACTCTTTTATCACAATCATGGAAACAA
CAGCATCAAATTTTGAGATTAACTTCCATACATCTTCAAAAGACAAGAAATTTTCATTTA
ACTCAAAATTCAAGATTTAAATTTAAAGATTTTGAGCATTTTCATGATCAAATGAAAAAT
TTGAAACCTAAAACAATGACAGAATTATTTAATAAAACTGTTGCTGATTTTCCTGATAGG
AATGCTTTAATGTATAAAAAAGAAGGCAGTGATGTATGGACAGCAGTGACTTACAAAGAA
TATAAAAACAAAGTTAAACAAATTGCAAAAGCTTTCATTAAATTAGGTCTTGAAAAAGAT
GGAAAAGTTGCAGTTTTAGCTTTTAATAGTAAAGAATGTGTTATATGA
>g8842.t1 Gene=g8842 Length=135
MIKSSSKIILKTLLSQSWKQQHQILRLTSIHLQKTRNFHLTQNSRFKFKDFEHFHDQMKN
LKPKTMTELFNKTVADFPDRNALMYKKEGSDVWTAVTYKEYKNKVKQIAKAFIKLGLEKD
GKVAVLAFNSKECVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8842.t1 | Gene3D | G3DSA:3.40.50.980 | - | 62 | 135 | 0 |
| 2 | g8842.t1 | PANTHER | PTHR43272 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 54 | 135 | 0 |
| 3 | g8842.t1 | PANTHER | PTHR43272:SF32 | LONG-CHAIN-FATTY-ACID–COA LIGASE ACSBG2 | 54 | 135 | 0 |
| 1 | g8842.t1 | Pfam | PF00501 | AMP-binding enzyme | 71 | 135 | 0 |
| 4 | g8842.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 29 | 135 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed