General information for g886.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g886 is located on chr_3: 6698284..6704814 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g886 | g886.t1 | isoform | g886.t1 | 6698284 | 6704814 |
| chr_3 | g886 | g886.t1 | exon | g886.t1.exon1 | 6698284 | 6698345 |
| chr_3 | g886 | g886.t1 | cds | g886.t1.CDS1 | 6698284 | 6698345 |
| chr_3 | g886 | g886.t1 | exon | g886.t1.exon2 | 6700228 | 6700304 |
| chr_3 | g886 | g886.t1 | cds | g886.t1.CDS2 | 6700228 | 6700304 |
| chr_3 | g886 | g886.t1 | exon | g886.t1.exon3 | 6700362 | 6700445 |
| chr_3 | g886 | g886.t1 | cds | g886.t1.CDS3 | 6700362 | 6700445 |
| chr_3 | g886 | g886.t1 | exon | g886.t1.exon4 | 6703322 | 6703517 |
| chr_3 | g886 | g886.t1 | cds | g886.t1.CDS4 | 6703322 | 6703517 |
| chr_3 | g886 | g886.t1 | exon | g886.t1.exon5 | 6703599 | 6703691 |
| chr_3 | g886 | g886.t1 | cds | g886.t1.CDS5 | 6703599 | 6703691 |
| chr_3 | g886 | g886.t1 | exon | g886.t1.exon6 | 6704169 | 6704814 |
| chr_3 | g886 | g886.t1 | cds | g886.t1.CDS6 | 6704169 | 6704814 |
| chr_3 | g886 | g886.t1 | TTS | g886.t1 | 6704827 | 6704827 |
| chr_3 | g886 | g886.t1 | TSS | g886.t1 | NA | NA |
Sequences
>g886.t1 Gene=g886 Length=1158
ATGGGCACAAGCGATGATATTGATTTTGGTGGTAGAAAAAGAAGTGAAATTTGTCGTCGG
CAATTTTGTGATGAAGTTTTGTGCTTTTGCCGAGAATTTTTTTTGTTTGTGGCTCTTGTC
GCTCTTGGTGGTGTTGCATGCACACTTGGTGGCGCAACTTTGGGATCAATAGCATTGGCT
GGTTCACCAACATCTCATCTAACTGCTGGACTGCTCATGACTGGAGTTGGGATTGTTTTG
GTAACAATCAGCGGTGTCGCATGGCGAATGACAACGTCAGACACACATCAATGTACAGGT
CGTTGCGGTAGACGTCAATGCAGTCGTGGAAATTCGTCATTTGGTCTGCTTTATCCAGAA
TTCCAACATCGACCACCACCACCATCATATCAAGCCAGCATGCAAGAGCATCGACTGCGA
GTAATGATGTTGGATCGAGAAAGACAAACAACATCAAATACACGCGCTTCGCCTCCACCT
ACATATCGCTCAAATACTGGTACACTCTTGAGGCCACCGATTCATTTCCAAAGACAAAAT
CAACAGCAACAACAGCATCAGAATGCAAGTAGTAACAATATTGTGCAAGTTGAAATTCCA
ATTGATGAATCAACATTAATAAATGACGCGAATGTAAGCAATTCGTCAACGAATAATGCT
ACAGAATATGTGCACACAAATCAATCACCGACATCATCACAGACAATTACGACAATCGCA
TCAATTAATCGACCCGATGATAATGACATAGCTGATGTGACATCATTAATCAGAATTAAT
GAAATGACGAGAGTGCAGCATGAAAATGAGACAGAAGAAAGCAACAGCAGCAGCAGTAGA
TGTAGGATTAATTATGTTAGCAGTAGTAACAGCAGCAGCAGCAGTAGTAATAGTAGTAAC
AGTAGTAGATGTAATAATGATAGGCACAATACTCTTTGTAATAATAAAATCACACTTGAC
CACCATCGACATCACATGATCAACAATGAAAATATTATAGTAATTGATGATAAGTGTAAA
AATGTAAATATTGGAAACATGATGGAAATAAATAAAGCACTAATGTCCAATTCACATCAC
ACGATGACACTTCCACGATGCACACAACAGCGTGCGAGTTTTTTGAATCGTGAGAATTGT
GAATTGGGTGTTAGGTAA
>g886.t1 Gene=g886 Length=385
MGTSDDIDFGGRKRSEICRRQFCDEVLCFCREFFLFVALVALGGVACTLGGATLGSIALA
GSPTSHLTAGLLMTGVGIVLVTISGVAWRMTTSDTHQCTGRCGRRQCSRGNSSFGLLYPE
FQHRPPPPSYQASMQEHRLRVMMLDRERQTTSNTRASPPPTYRSNTGTLLRPPIHFQRQN
QQQQQHQNASSNNIVQVEIPIDESTLINDANVSNSSTNNATEYVHTNQSPTSSQTITTIA
SINRPDDNDIADVTSLIRINEMTRVQHENETEESNSSSSRCRINYVSSSNSSSSSSNSSN
SSRCNNDRHNTLCNNKITLDHHRHHMINNENIIVIDDKCKNVNIGNMMEINKALMSNSHH
TMTLPRCTQQRASFLNRENCELGVR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g886.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 305 | - |
| 5 | g886.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 305 | - |
| 1 | g886.t1 | PANTHER | PTHR37002:SF10 | AGAP007005-PA | 35 | 173 | 1.0E-31 |
| 2 | g886.t1 | PANTHER | PTHR37002 | AGAP007005-PA | 35 | 173 | 1.0E-31 |
| 9 | g886.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 32 | - |
| 11 | g886.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 33 | 60 | - |
| 7 | g886.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 61 | 66 | - |
| 10 | g886.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 67 | 88 | - |
| 8 | g886.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 89 | 385 | - |
| 4 | g886.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 33 | 55 | - |
| 3 | g886.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 87 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
