Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Raf homolog serine/threonine-protein kinase Raf.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8869 g8869.t2 TSS g8869.t2 33596669 33596669
chr_2 g8869 g8869.t2 isoform g8869.t2 33596943 33598029
chr_2 g8869 g8869.t2 exon g8869.t2.exon1 33596943 33597751
chr_2 g8869 g8869.t2 cds g8869.t2.CDS1 33597387 33597751
chr_2 g8869 g8869.t2 exon g8869.t2.exon2 33597814 33598029
chr_2 g8869 g8869.t2 cds g8869.t2.CDS2 33597814 33598027
chr_2 g8869 g8869.t2 TTS g8869.t2 NA NA

Sequences

>g8869.t2 Gene=g8869 Length=1025
ATGGATCAAAATGGAGAAAGCAGCTCTTTGGCTGAGATGCAGATTGAATTAGAGAATGTT
CAGAGCATTATTAAATTCACAATAAGGTATGAAAAGTTGATTTTCACGAAGGAAAAAATA
GTTTTCCCTAATTTATGATAAATTCTATTTTACAGTGCAATCGATGCTCTCAATGATCGA
TTTAGTAAATTTAAGCCGCCACCAAAAATTTATGTCGAGGAATATAAAGATTTGACGAGC
AAGTTGCATCAATTTAAGACAGTTGAACAAAATCTTATTGAGAAAATTCAGTCCTTAGAA
GCAGAGTTGGAGAGTAAATTGCATCCAAAGCAACAGAAGTTATTTTTGCGAGCTCATCTG
CCCAATCAACAACGTACATCAGTGCAAATTGTTCAAGGACAAAGACTTCGGGATGCTTTA
GCAAAAGCATTGAGTCGTCGAAATATGAATTTTGAAATGTGTGAAGTTTATCAAACAGGA
GGTGAAGGTGAAGACATTCCAATTCCATGGGATACTGACATAAGCACACTTAAGTGTGAT
GAAATTAGTGTAAAAATTTTGGATATTGTTGGATTTCCGACTTATATTTCACATCAATTT
ATTCGCAAAACATTCTTTTCGCTTGCATTTTGCGAATGCTGCCGTCGATTACTTTTTACT
GGATTTTATTGCAATCAATGCAACTACAGATTTCATCAAAGATGTGTCGATAAAGTTCCT
CCATTATGCAGTAAATTACAAATGGACACTTATTATCAATTATTGCTTTCTGAAACACTC
GGCTCAAGTGGTTCTAGTGGATTTCATAGACATCCAAAGACATTAAATTTTGAGAATCGA
TCAAATTCAGCGCCAAATGTATGCGTAAATAGTGTTTTAAAGCCATTACTTGGGAGTGAT
CAAAAGATTTTGGCTAATTCAAAGTGTCCCATTCCATTGCAAACTTACTCAGAACATTCA
CATTCCACTCAGGCATCGCCAACAAATACATTAAAGCATGCAAAAAGAAAACAACGTGCA
CGAGC

>g8869.t2 Gene=g8869 Length=193
MNFEMCEVYQTGGEGEDIPIPWDTDISTLKCDEISVKILDIVGFPTYISHQFIRKTFFSL
AFCECCRRLLFTGFYCNQCNYRFHQRCVDKVPPLCSKLQMDTYYQLLLSETLGSSGSSGF
HRHPKTLNFENRSNSAPNVCVNSVLKPLLGSDQKILANSKCPIPLQTYSEHSHSTQASPT
NTLKHAKRKQRAR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8869.t2 CDD cd00029 C1 50 95 3.14787E-10
6 g8869.t2 Gene3D G3DSA:3.10.20.90 - 1 50 1.0E-7
7 g8869.t2 Gene3D G3DSA:3.30.60.20 - 51 97 2.8E-14
11 g8869.t2 MobiDBLite mobidb-lite consensus disorder prediction 170 193 -
3 g8869.t2 PANTHER PTHR44329:SF193 RAF HOMOLOG SERINE/THREONINE-PROTEIN KINASE RAF 2 159 1.8E-43
4 g8869.t2 PANTHER PTHR44329 SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 2 159 1.8E-43
1 g8869.t2 Pfam PF02196 Raf-like Ras-binding domain 2 36 2.9E-6
2 g8869.t2 Pfam PF00130 Phorbol esters/diacylglycerol binding domain (C1 domain) 50 96 6.1E-10
9 g8869.t2 ProSitePatterns PS00479 Zinc finger phorbol-ester/DAG-type signature. 50 95 -
12 g8869.t2 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 49 95 13.49
10 g8869.t2 SMART SM00109 c1_12 50 95 2.3E-9
5 g8869.t2 SUPERFAMILY SSF57889 Cysteine-rich domain 31 96 2.69E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007165 signal transduction BP
GO:0035556 intracellular signal transduction BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed