General information for g89.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ABC transporter G family member 23.
Parent gene
- The parent gene g89 is located on chr_3: 840279..858467 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g89 | g89.t1 | TSS | g89.t1 | 840262 | 840262 |
| chr_3 | g89 | g89.t1 | isoform | g89.t1 | 840279 | 858467 |
| chr_3 | g89 | g89.t1 | exon | g89.t1.exon1 | 840279 | 840382 |
| chr_3 | g89 | g89.t1 | cds | g89.t1.CDS1 | 840279 | 840382 |
| chr_3 | g89 | g89.t1 | exon | g89.t1.exon2 | 840685 | 841470 |
| chr_3 | g89 | g89.t1 | cds | g89.t1.CDS2 | 840685 | 841470 |
| chr_3 | g89 | g89.t1 | exon | g89.t1.exon3 | 841968 | 842528 |
| chr_3 | g89 | g89.t1 | cds | g89.t1.CDS3 | 841968 | 842528 |
| chr_3 | g89 | g89.t1 | exon | g89.t1.exon4 | 842589 | 842951 |
| chr_3 | g89 | g89.t1 | cds | g89.t1.CDS4 | 842589 | 842951 |
| chr_3 | g89 | g89.t1 | exon | g89.t1.exon5 | 844686 | 844762 |
| chr_3 | g89 | g89.t1 | cds | g89.t1.CDS5 | 844686 | 844762 |
| chr_3 | g89 | g89.t1 | exon | g89.t1.exon6 | 857857 | 857885 |
| chr_3 | g89 | g89.t1 | cds | g89.t1.CDS6 | 857857 | 857885 |
| chr_3 | g89 | g89.t1 | exon | g89.t1.exon7 | 857943 | 858467 |
| chr_3 | g89 | g89.t1 | cds | g89.t1.CDS7 | 857943 | 858467 |
| chr_3 | g89 | g89.t1 | TTS | g89.t1 | NA | NA |
Sequences
>g89.t1 Gene=g89 Length=2445
ATGAAGTGTATTGAAGTTAGAGACGTTGTGAAATCATTTAAAACAAATTCTGAGGAAATT
AAAGTTTTGAATGGCGTTAACATGACTGTTGATTGTAATTCAATTTATTCTTTAATTGGT
TCATCAGGTTGTGGTAAAACAACTTTATTGTCATTAATTCTTGGCATGGACAAATTTCAA
AATGGTGAAATTAAAATTTTCAAAACGCCAGTTAAATATGAAAAAACTTTAATGTTTTCA
CAATTAATTGGTTTTATGCCACAAAATTCTTCTGTTCCAATGAATTTAACAATTTTTGAA
GTTCTTCAATATTTTTCAAATTTACACATGATGGATCGAAAAAAATTTCAATATCGATTT
GAAATGATTTTGGAATTATTGAATTTGCCATCATCTGACACTGTAATAGGAAAATTATCA
GAAGGTGGAAAACGAAGAGTTTCATTGGCAATTGCAATTATTCATGATCCTAAATTGTTG
CTGCTTGATGAACCAACTGTTGGTGTTGACATTCTTTTACGTGATAAAATTTGGACTTTT
TTGCAAGAACAAACTTTGAAGAAAAAGCTAACAGTGCTCGTCACAACTCACTGCCTTAAT
GAAGCAGAAAAATCAGATCGATGTGGATTTTTACATAAAGGAACTCTTGTAGTTGAAAAT
GCACCATCGAAAATTAAAAATCAATTTAATGTTCCATTACTTGACAATGCTTTCATAAAA
ATTTGCACAAATCAGCTGAAAAATTCTCAAATTGATGATTATGACACTGCTAAAATAATT
GAAGAAGAAAATTTAAATTTTGAAATTAAAAAAGAAAGAAAAATTTTGAGAAGTCAAGTT
GTGAAAGGTTTAGCAATTAAAGAATGGCATCGAATAAAAAGACAATTTTTTGACTTGATG
ATAATATTTTTAACATCTTCAACAATTATTGGAGTCAATTATTTTTTACTTGGAAGATTT
CCAAATGATTTAAGAATTGGAATTTTTATGGAATCAAAAAATTGGAATTCATGTGAAAAT
TTCCAAAAAAATTACTCAATTTCAAAAGATTTATGTCAAAATGCTGATTTTTCTTGTGAA
TTTTTAAATTACATCAAAAATACTGAAAAAGTTTTTTATGACAATTATCAACAAGCATTT
AATGATTTTAAACATGGAAAAAATTTTGGATTTATTTTTATCAAAAACAATTTCACAAAA
AGTCTTTTAAAAAAAGTCAATTTAAAGGAATCAAAAACTGTTGAGATTTTCTTAGATCAT
TCTAGAGGATTATTTAAAAGTTTTCTACAAATGAAAATTCATGAAGCATTTCATGAATTT
ATGGAAGATTTAGCAAAAAGATGCAATGTGAAACCTTATTTGTTGTTATCATCATTTGAA
GCTAAAGACATAAAAGGAGAAAAAGTCTCATTTGAAATGTTTAAAACACTTGCAATCAAC
ATGATTTCATTAGCTGCATTTACACCAACAATGTTTTTCTCATTACTTTTAATATTTGAA
TGTCGCAATGAAGGAATTTGGAATCGAACACTTTTAAGTGGTGTTAAAATGACTGAAATT
GTCTTTGTTTATTTCATTCAATCATTCATCATTTCAGTTATTGTTGCAATTGAAATAATT
TTATTTTTAAAATTTGTAATGGATCTAAACATTGGAGAACATTGTTGGATTATAGCATTG
ATGGTTTTTGAAATTGCACAATTTGGTTATCTTGCTGGATTTCAAATATCAATAACTTTT
AAAAATTTATTTCTTTCTGCTTGTTTTCTTTTGATTTTTTTGACACTTGAAATGGACGCA
ACTGGAATTTTTTGGCCACTTGAAGGTGCATTGGAATGGAGTTATCCATATGTTTATACA
AATCCTCTTACATTTCCAAATTTAGCATTTCTGTTTTTAATAAATTTTTCATCATCTGAA
TTGACATTACAAGTTTATAAATTAGAATGCATAAATGAAAATGAAACAAGATTTTTTGAA
AATATCAATTGCAAATTAAGGACAATTCGTCGTGGAGTGAATGCAATTGATGTTTATGCA
GATGTAAAACAAGATTTTGATTATGCATTGATGAATATTGAATTAATGTTAAAATCATCA
TCAAATCAATTCAATTCAGTCATTATAAACAACACATTCGAAGTTTGTGATTCAATTGAC
AATATGCCACCAATGTTTAAATTTATTCTTCCATTATTGGACAGATTTGGCAAGTTTTTA
CACAAATGTCCTTTTACAACAGCTGAAAAAGAATTAGGCATGAAAAATCTTGAACTTGAT
ACAAAATTAATTCCATTAATTGCTTTGAGTACGATGGAAAGAGGTGATTATCGATGTAAG
ACAACTTTTACTTATAAAGAAAATGAAGTCATATTTAGAAGTTCAGTTTATATGAAAATT
ATACAACAAAGTTTTAAAAGAAAAACTACATCAAAAACTGATTAA
>g89.t1 Gene=g89 Length=814
MKCIEVRDVVKSFKTNSEEIKVLNGVNMTVDCNSIYSLIGSSGCGKTTLLSLILGMDKFQ
NGEIKIFKTPVKYEKTLMFSQLIGFMPQNSSVPMNLTIFEVLQYFSNLHMMDRKKFQYRF
EMILELLNLPSSDTVIGKLSEGGKRRVSLAIAIIHDPKLLLLDEPTVGVDILLRDKIWTF
LQEQTLKKKLTVLVTTHCLNEAEKSDRCGFLHKGTLVVENAPSKIKNQFNVPLLDNAFIK
ICTNQLKNSQIDDYDTAKIIEEENLNFEIKKERKILRSQVVKGLAIKEWHRIKRQFFDLM
IIFLTSSTIIGVNYFLLGRFPNDLRIGIFMESKNWNSCENFQKNYSISKDLCQNADFSCE
FLNYIKNTEKVFYDNYQQAFNDFKHGKNFGFIFIKNNFTKSLLKKVNLKESKTVEIFLDH
SRGLFKSFLQMKIHEAFHEFMEDLAKRCNVKPYLLLSSFEAKDIKGEKVSFEMFKTLAIN
MISLAAFTPTMFFSLLLIFECRNEGIWNRTLLSGVKMTEIVFVYFIQSFIISVIVAIEII
LFLKFVMDLNIGEHCWIIALMVFEIAQFGYLAGFQISITFKNLFLSACFLLIFLTLEMDA
TGIFWPLEGALEWSYPYVYTNPLTFPNLAFLFLINFSSSELTLQVYKLECINENETRFFE
NINCKLRTIRRGVNAIDVYADVKQDFDYALMNIELMLKSSSNQFNSVIINNTFEVCDSID
NMPPMFKFILPLLDRFGKFLHKCPFTTAEKELGMKNLELDTKLIPLIALSTMERGDYRCK
TTFTYKENEVIFRSSVYMKIIQQSFKRKTTSKTD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g89.t1 | CDD | cd03230 | ABC_DR_subfamily_A | 4 | 216 | 1.98219E-49 |
| 9 | g89.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 271 | 8.2E-51 |
| 5 | g89.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 1 | 252 | 1.8E-104 |
| 7 | g89.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 1 | 252 | 1.8E-104 |
| 4 | g89.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 256 | 646 | 1.8E-104 |
| 6 | g89.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 256 | 646 | 1.8E-104 |
| 3 | g89.t1 | Pfam | PF00005 | ABC transporter | 23 | 166 | 1.7E-27 |
| 1 | g89.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 321 | 635 | 6.6E-8 |
| 2 | g89.t1 | Pfam | PF06477 | Protein of unknown function (DUF1091) | 691 | 767 | 8.0E-9 |
| 13 | g89.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 295 | - |
| 22 | g89.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 316 | - |
| 16 | g89.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 317 | 476 | - |
| 19 | g89.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 477 | 499 | - |
| 10 | g89.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 500 | 519 | - |
| 18 | g89.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 520 | 545 | - |
| 14 | g89.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 546 | 550 | - |
| 21 | g89.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 551 | 571 | - |
| 11 | g89.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 572 | 582 | - |
| 17 | g89.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 583 | 605 | - |
| 15 | g89.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 606 | 616 | - |
| 20 | g89.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 617 | 637 | - |
| 12 | g89.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 638 | 814 | - |
| 31 | g89.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 4 | 238 | 19.074 |
| 30 | g89.t1 | SMART | SM00382 | AAA_5 | 32 | 235 | 6.5E-7 |
| 8 | g89.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 230 | 9.92E-49 |
| 29 | g89.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 318 | - |
| 27 | g89.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 477 | 499 | - |
| 28 | g89.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 520 | 542 | - |
| 26 | g89.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 557 | 576 | - |
| 25 | g89.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 583 | 605 | - |
| 24 | g89.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 615 | 637 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed