Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Translocator protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8911 g8911.t5 TTS g8911.t5 33783679 33783679
chr_2 g8911 g8911.t5 isoform g8911.t5 33783792 33784385
chr_2 g8911 g8911.t5 exon g8911.t5.exon1 33783792 33783893
chr_2 g8911 g8911.t5 cds g8911.t5.CDS1 33783793 33783893
chr_2 g8911 g8911.t5 exon g8911.t5.exon2 33783947 33783992
chr_2 g8911 g8911.t5 cds g8911.t5.CDS2 33783947 33783992
chr_2 g8911 g8911.t5 exon g8911.t5.exon3 33784047 33784385
chr_2 g8911 g8911.t5 cds g8911.t5.CDS3 33784047 33784385
chr_2 g8911 g8911.t5 TSS g8911.t5 33784457 33784457

Sequences

>g8911.t5 Gene=g8911 Length=487
ATGCCAATTTCATCTTGCTTTGAAAAACCAGCTGTACAAATAGCTACTGCTATTTTAATT
CCAAATCTTGGCGGATGGATATCCGGAATTCAAACAAAAAAGCAAATTAAGGGCTGGTAT
GAGACTCTTGTGCTTCCAAAATGCCGTCCACCAAATTGGGTATTTCCAATAGCTTGGACT
TCTCTATATACTACAATGGGTTATGCGAGTTATATCGTTTGGAAGCAAGGACATGGTTTT
GATGGACCGGCTCATTTTCCTCTGATTTTGTATGGAGCTCAGCTTGCTTTGAACTTTGCA
TGGACACCAATCTTTTTTGTAAAGCATGAACTTAAATGGAGTTTTGTTGAAATTATTGCT
TTAACGGCTACTGCTGCTGCTACTGCTTGCTTGGCTCAGTTTTGCGAGTTATTTGAACCA
TTCGATATGGAAAAACAACACACCGGCAATCGAAGACAAGAAACCGGAAGCGGTAAAGGA
AAAATAA

>g8911.t5 Gene=g8911 Length=162
MPISSCFEKPAVQIATAILIPNLGGWISGIQTKKQIKGWYETLVLPKCRPPNWVFPIAWT
SLYTTMGYASYIVWKQGHGFDGPAHFPLILYGAQLALNFAWTPIFFVKHELKWSFVEIIA
LTATAAATACLAQFCELFEPFDMEKQHTGNRRQETGSGKGKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g8911.t5 CDD cd15904 TSPO_MBR 18 119 2.88029E-36
7 g8911.t5 Gene3D G3DSA:1.20.1260.100 - 8 136 4.1E-43
2 g8911.t5 PANTHER PTHR10057 PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR 11 131 3.8E-40
1 g8911.t5 Pfam PF03073 TspO/MBR family 17 131 6.4E-35
10 g8911.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 52 -
12 g8911.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 53 74 -
9 g8911.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 75 85 -
13 g8911.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 86 107 -
11 g8911.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 108 112 -
14 g8911.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 113 135 -
8 g8911.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 136 162 -
6 g8911.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
3 g8911.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 52 74 -
5 g8911.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 84 106 -
4 g8911.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 113 135 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values