Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable multidrug resistance-associated protein lethal(2)03659.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8918 g8918.t5 TSS g8918.t5 33804011 33804011
chr_2 g8918 g8918.t5 isoform g8918.t5 33804207 33806225
chr_2 g8918 g8918.t5 exon g8918.t5.exon1 33804207 33804210
chr_2 g8918 g8918.t5 exon g8918.t5.exon2 33804672 33804803
chr_2 g8918 g8918.t5 cds g8918.t5.CDS1 33804724 33804803
chr_2 g8918 g8918.t5 exon g8918.t5.exon3 33804866 33805539
chr_2 g8918 g8918.t5 cds g8918.t5.CDS2 33804866 33805539
chr_2 g8918 g8918.t5 exon g8918.t5.exon4 33805600 33805679
chr_2 g8918 g8918.t5 cds g8918.t5.CDS3 33805600 33805679
chr_2 g8918 g8918.t5 exon g8918.t5.exon5 33805742 33805911
chr_2 g8918 g8918.t5 cds g8918.t5.CDS4 33805742 33805911
chr_2 g8918 g8918.t5 exon g8918.t5.exon6 33805968 33806225
chr_2 g8918 g8918.t5 cds g8918.t5.CDS5 33805968 33806223
chr_2 g8918 g8918.t5 TTS g8918.t5 33806221 33806221

Sequences

>g8918.t5 Gene=g8918 Length=1318
TTAAACTCAAATGATATCAATTAGTTGATTGAAATTTATCATACATCAAAAAAAAAATGG
AGTCAAATTCAAAACAACAAAATTTACCAAAACATCCAAGAGAAAATGGAAGCGTGTTTT
CATATTTAACATTTAGTTGGGTATTGCCGTTGTTGCTAAAAGGAAGAAAGAAAACTTTAG
AATTAGAGGACTTGTATCAACCTCTTTCACAACATTTGGCAGCAAATTTAGGAACAAAAT
TGGAAAAATCATGGAAAAATGAAGTAAATTCAAAGCGATCAAAAAATAAAAATCCAAGTT
TGATGCGTGCGGGCTTAAAAGTTTTTGGTCCTAATTTAATGTCACATGGATTTTTTCTTT
TATTAATTGAAATGTGTTTCAAAGTCACAATGCCCCTTCTGCTTGGTGGTATATTGCGGT
ATTATGGAAATCCAAACAATTCGGATCCTAAAATTGCTTATTTTTATGCTGGCGGGTTGA
TTTTGTGCAGCTTTCTTAATGTCATTTGTGCACATGGTTTGATGCTGAGTAATTTGAATG
TTGGAATGAAGATGCGAGTTTCAGCTTGTTCATTGATATATCGAAAATCTTTACGTCTCA
GTAAATCAGCATTACTTAATACAACGAGTGGTCAAGTTGTTAATTTGCTTTCTAATGATG
TTGGACGATTCGAACTTATTGCTATGTTTGTGCATTATTTATGGGTTGGTCCAATTGAAA
CAATTGTGATAGGAGTATTGATGTATATGGAAATTGGAATATCTGCTATAGCTGGTATTC
TCTTCTTATTGCTCTTTATTCCATTTCAATTCTATCTTGGAAAAAAAACATCGCAACTTC
GTTTAAGAGTAGCTCTTAGGACTGATGAGAGAGTAAGGTTGATGAATGAGATCATTCAAG
GTATACAAGTTATTAAAATGTACGCTTGGGAAAAACCTTTCGCCAAAGTCGTCTCGATGG
CTCGTGGTAGAGAAATTCGTGCAATTAGATTTGCATCATGGATACGTGGAATTTTACTCT
CATTCATTATGTTCAGTTCCCGTGTGTCAATTTTTACAAGTCTTGTGATGTTTGCGTTGC
TCGGCTACACATTAACTGCACAACAAGCATTTGCAGTAACTGCCTATTATAATGTATTAA
GACAAACAATGACAGTTTTCTTTCCTCAAGCAATTGGTTTTCTTGCAGAAACAATTGTTA
GTGTAAAGAGATTGGAAAAGTTTATGCTCTATGAGGAACTTGATCGTGATTTTCAAAATA
CTTCAAAAATGAGTGAAAATGAGAAGCAACCACATGAAAATGGTCACATAAAAGAAAA

>g8918.t5 Gene=g8918 Length=420
MESNSKQQNLPKHPRENGSVFSYLTFSWVLPLLLKGRKKTLELEDLYQPLSQHLAANLGT
KLEKSWKNEVNSKRSKNKNPSLMRAGLKVFGPNLMSHGFFLLLIEMCFKVTMPLLLGGIL
RYYGNPNNSDPKIAYFYAGGLILCSFLNVICAHGLMLSNLNVGMKMRVSACSLIYRKSLR
LSKSALLNTTSGQVVNLLSNDVGRFELIAMFVHYLWVGPIETIVIGVLMYMEIGISAIAG
ILFLLLFIPFQFYLGKKTSQLRLRVALRTDERVRLMNEIIQGIQVIKMYAWEKPFAKVVS
MARGREIRAIRFASWIRGILLSFIMFSSRVSIFTSLVMFALLGYTLTAQQAFAVTAYYNV
LRQTMTVFFPQAIGFLAETIVSVKRLEKFMLYEELDRDFQNTSKMSENEKQPHENGHIKE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g8918.t5 Gene3D G3DSA:1.20.1560.10 - 61 397 4.6E-19
2 g8918.t5 PANTHER PTHR24223:SF360 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659-LIKE PROTEIN-RELATED 7 401 8.6E-117
3 g8918.t5 PANTHER PTHR24223 ATP-BINDING CASSETTE SUB-FAMILY C 7 401 8.6E-117
1 g8918.t5 Pfam PF00664 ABC transporter transmembrane region 98 365 9.3E-29
18 g8918.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
26 g8918.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 36 -
16 g8918.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 37 97 -
21 g8918.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 123 -
17 g8918.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 124 134 -
27 g8918.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 135 157 -
15 g8918.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 158 206 -
25 g8918.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 207 229 -
20 g8918.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 230 234 -
22 g8918.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 235 254 -
13 g8918.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 255 317 -
24 g8918.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 318 344 -
19 g8918.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 345 363 -
23 g8918.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 364 383 -
14 g8918.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 384 420 -
12 g8918.t5 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 98 377 33.638
10 g8918.t5 SUPERFAMILY SSF90123 ABC transporter transmembrane region 95 390 3.92E-35
6 g8918.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 98 120 -
9 g8918.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 135 157 -
5 g8918.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 207 229 -
8 g8918.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 233 255 -
7 g8918.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 318 340 -
4 g8918.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 360 382 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values