General information for g8921.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lysophospholipid acyltransferase 2.
Parent gene
- The parent gene g8921 is located on chr_2: 33818501..33819010 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8921 | g8921.t12 | TSS | g8921.t12 | 33813080 | 33813080 |
| chr_2 | g8921 | g8921.t12 | isoform | g8921.t12 | 33813254 | 33818268 |
| chr_2 | g8921 | g8921.t12 | exon | g8921.t12.exon1 | 33813254 | 33813355 |
| chr_2 | g8921 | g8921.t12 | cds | g8921.t12.CDS1 | 33813254 | 33813355 |
| chr_2 | g8921 | g8921.t12 | exon | g8921.t12.exon2 | 33816675 | 33816898 |
| chr_2 | g8921 | g8921.t12 | cds | g8921.t12.CDS2 | 33816675 | 33816898 |
| chr_2 | g8921 | g8921.t12 | exon | g8921.t12.exon3 | 33816958 | 33817129 |
| chr_2 | g8921 | g8921.t12 | cds | g8921.t12.CDS3 | 33816958 | 33817129 |
| chr_2 | g8921 | g8921.t12 | exon | g8921.t12.exon4 | 33817187 | 33817357 |
| chr_2 | g8921 | g8921.t12 | cds | g8921.t12.CDS4 | 33817187 | 33817357 |
| chr_2 | g8921 | g8921.t12 | exon | g8921.t12.exon5 | 33817420 | 33817555 |
| chr_2 | g8921 | g8921.t12 | cds | g8921.t12.CDS5 | 33817420 | 33817555 |
| chr_2 | g8921 | g8921.t12 | exon | g8921.t12.exon6 | 33817621 | 33817826 |
| chr_2 | g8921 | g8921.t12 | cds | g8921.t12.CDS6 | 33817621 | 33817826 |
| chr_2 | g8921 | g8921.t12 | exon | g8921.t12.exon7 | 33817881 | 33818081 |
| chr_2 | g8921 | g8921.t12 | cds | g8921.t12.CDS7 | 33817881 | 33818081 |
| chr_2 | g8921 | g8921.t12 | exon | g8921.t12.exon8 | 33818137 | 33818268 |
| chr_2 | g8921 | g8921.t12 | cds | g8921.t12.CDS8 | 33818137 | 33818268 |
| chr_2 | g8921 | g8921.t12 | TTS | g8921.t12 | 33819275 | 33819275 |
Sequences
>g8921.t12 Gene=g8921 Length=1344
ATGACAAATAAATTGGATATTGAGATTGGAGAGGAATCGGGTTACGAAGGAAGCAAAGTT
TTTGTATCACTGGCTGATGCAATTGGACTATCAGTGGATTTGACAAACTTTTTGATCACA
CAAGGACTTGCATTACTTTTGGCTTCATTATTTCGATCTTATTTGCATCCATCGAAAGTA
ACAGCCAGTGTTCGTCATGCCTTTGGTTTAGTAATTGGCTTATTGTTTGGCTATTTTTGC
TTTGGTTTACAAGCAGTTCATATTGCTGGTTTACCTGCAATATGCTACATTGTATTACGC
ACTCAAAATCCAATGATTGTTCAAAGAATTGTCATGGCTGTTGCACTCACTTATTTGTCA
TGTATTCACTTGCATCGACAATATAATAGCAACGGAGCATATACGTTAGATATCACTGGT
CCATTAATGATTATTACTCAAAAAGTCACGAGTTTAGCGTTTAGCATTCATGATGGATTT
TTATTAAAAAAAGAAAAGCAACTTTCAAAGAATCAGCAATATCATGTGATTGAGAAAGTG
CCGACACCACTAGAATATTTTTCATATGTTCTTAATTTTCAAAGTCTCATGGCTGGTCCG
TTGGTTTTCTATCGAGACTATATTGATTTTATCGAAGGATGTAACATGATTACTAAATCC
AACTCAAATGGAAAATTGGATGAGAGAAAACAAATTCATGAACCATCACCAACAAAAGCT
GTTTTGAAAAAAGTTCTCGCCAGTGTTGTTTGTGCTTACATCTTTGTCAAATTGATTAAC
GTTTATCCAATTAAAAATATGAAAGATGATTCTTTTATCAATGATGCAAATGTATTTTAT
AAATTTTGGTACATCATGATGGCCACAATGGCAGTTCGTTTTAAATATTATTTTGCTTGG
ATGTTCGCTGAAGCAATAGTCAATAACGCTGGTCTTGGTTTTAATGGTTATGAAAATGAT
GGTACAGCTAAATGGGATATGTTGACAAACATTTATGTGATACCTTTTGAGTTGGGAACA
AATTTTCGTGATTGTATTAACAGTTGGAATATTGGAACAAATTCTTGGCTTCGCATGGTT
GTATATGAACGTGTACATAAGAATTATGGAACGGGTTTAACATTTGCATTGTCAGCTTTA
TGGCATGGCTTCTATCCGGGCTATTATTTGACATTTGCAACTGGCGCTCTTATTGTGACT
GCTGCTCGAAAGGCAAGAAGAATGTTCCGTCATCGATTCCAAGAGACGGAATTATCAAGA
ACTTTCTATGATGTAATTACATGCATTGTAACACGTTTATTCATGGGTTATGCGACTTTC
CCATTTGTGTTACTTGAATTTGGA
>g8921.t12 Gene=g8921 Length=448
MTNKLDIEIGEESGYEGSKVFVSLADAIGLSVDLTNFLITQGLALLLASLFRSYLHPSKV
TASVRHAFGLVIGLLFGYFCFGLQAVHIAGLPAICYIVLRTQNPMIVQRIVMAVALTYLS
CIHLHRQYNSNGAYTLDITGPLMIITQKVTSLAFSIHDGFLLKKEKQLSKNQQYHVIEKV
PTPLEYFSYVLNFQSLMAGPLVFYRDYIDFIEGCNMITKSNSNGKLDERKQIHEPSPTKA
VLKKVLASVVCAYIFVKLINVYPIKNMKDDSFINDANVFYKFWYIMMATMAVRFKYYFAW
MFAEAIVNNAGLGFNGYENDGTAKWDMLTNIYVIPFELGTNFRDCINSWNIGTNSWLRMV
VYERVHKNYGTGLTFALSALWHGFYPGYYLTFATGALIVTAARKARRMFRHRFQETELSR
TFYDVITCIVTRLFMGYATFPFVLLEFG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8921.t12 | PANTHER | PTHR13906 | PORCUPINE | 15 | 447 | 2.4E-145 |
| 1 | g8921.t12 | Pfam | PF03062 | MBOAT, membrane-bound O-acyltransferase family | 46 | 438 | 2.1E-39 |
| 14 | g8921.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 33 | - |
| 21 | g8921.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 55 | - |
| 10 | g8921.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 56 | 66 | - |
| 24 | g8921.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 67 | 99 | - |
| 17 | g8921.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 100 | 104 | - |
| 19 | g8921.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 124 | - |
| 9 | g8921.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 125 | 135 | - |
| 20 | g8921.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 136 | 156 | - |
| 15 | g8921.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 157 | 244 | - |
| 23 | g8921.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 245 | 262 | - |
| 12 | g8921.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 263 | 281 | - |
| 25 | g8921.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 303 | - |
| 13 | g8921.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 304 | 382 | - |
| 22 | g8921.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 383 | 402 | - |
| 11 | g8921.t12 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 403 | 421 | - |
| 18 | g8921.t12 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 422 | 445 | - |
| 16 | g8921.t12 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 446 | 448 | - |
| 8 | g8921.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 55 | - |
| 6 | g8921.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 90 | - |
| 7 | g8921.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 124 | - |
| 5 | g8921.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 318 | - |
| 3 | g8921.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 379 | 401 | - |
| 4 | g8921.t12 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 422 | 444 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K13517 (lysophospholipid acyltransferase 1/2 [EC:2.3.1.51 2.3.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
