General information for g8921.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lysophospholipid acyltransferase 2.
Parent gene
- The parent gene g8921 is located on chr_2: 33818501..33819010 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8921 | g8921.t17 | TSS | g8921.t17 | 33813080 | 33813080 |
| chr_2 | g8921 | g8921.t17 | isoform | g8921.t17 | 33813254 | 33819010 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon1 | 33813254 | 33813355 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS1 | 33813254 | 33813355 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon2 | 33816675 | 33816898 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS2 | 33816675 | 33816898 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon3 | 33816958 | 33817129 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS3 | 33816958 | 33817129 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon4 | 33817187 | 33817357 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS4 | 33817187 | 33817357 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon5 | 33817420 | 33817555 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS5 | 33817420 | 33817555 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon6 | 33817621 | 33817811 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS6 | 33817621 | 33817811 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon7 | 33817881 | 33818081 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS7 | 33817881 | 33818081 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon8 | 33818137 | 33818268 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS8 | 33818137 | 33818268 |
| chr_2 | g8921 | g8921.t17 | exon | g8921.t17.exon9 | 33818324 | 33819010 |
| chr_2 | g8921 | g8921.t17 | cds | g8921.t17.CDS9 | 33818324 | 33819010 |
| chr_2 | g8921 | g8921.t17 | TTS | g8921.t17 | 33819275 | 33819275 |
Sequences
>g8921.t17 Gene=g8921 Length=2016
ATGACAAATAAATTGGATATTGAGATTGGAGAGGAATCGGGTTACGAAGGAAGCAAAGTT
TTTGTATCACTGGCTGATGCAATTGGACTATCAGTGGATTTGACAAACTTTTTGATCACA
CAAGGACTTGCATTACTTTTGGCTTCATTATTTCGATCTTATTTGCATCCATCGAAAGTA
ACAGCCAGTGTTCGTCATGCCTTTGGTTTAGTAATTGGCTTATTGTTTGGCTATTTTTGC
TTTGGTTTACAAGCAGTTCATATTGCTGGTTTACCTGCAATATGCTACATTGTATTACGC
ACTCAAAATCCAATGATTGTTCAAAGAATTGTCATGGCTGTTGCACTCACTTATTTGTCA
TGTATTCACTTGCATCGACAATATAATAGCAACGGAGCATATACGTTAGATATCACTGGT
CCATTAATGATTATTACTCAAAAAGTCACGAGTTTAGCGTTTAGCATTCATGATGGATTT
TTATTAAAAAAAGAAAAGCAACTTTCAAAGAATCAGCAATATCATGTGATTGAGAAAGTG
CCGACACCACTAGAATATTTTTCATATGTTCTTAATTTTCAAAGTCTCATGGCTGGTCCG
TTGGTTTTCTATCGAGACTATATTGATTTTATCGAAGGATGTAACATGATTACTAAATCC
AACTCAAATGGAAAATTGGATGAGAGAAAACAAATTCATGAACCATCACCAACAAAAGCT
GTTTTGAAAAAAGTTCTCGCCAGTGTTGTTTGTGCTTACATCTTTGTCAAATTGATTAAC
GTTTATCCAATTAAAAATATGAAAGATGATTCTTTTATCAATGATGCAAATGTATTTTAT
AAATTTTGGTACATCATGATGGCCACAATGGCAGTTCGTTTTAAATATTATTTTGCTTGG
ATGTTCGCTGAAGCAATAGTCAATAACGCTGGTCTTGGTTTTAATGGTTATGAAAATGAT
GGTACAGCTAAATGGGATATGTTGACAAACATTTATTTGGGAACAAATTTTCGTGATTGT
ATTAACAGTTGGAATATTGGAACAAATTCTTGGCTTCGCATGGTTGTATATGAACGTGTA
CATAAGAATTATGGAACGGGTTTAACATTTGCATTGTCAGCTTTATGGCATGGCTTCTAT
CCGGGCTATTATTTGACATTTGCAACTGGCGCTCTTATTGTGACTGCTGCTCGAAAGGCA
AGAAGAATGTTCCGTCATCGATTCCAAGAGACGGAATTATCAAGAACTTTCTATGATGTA
ATTACATGCATTGTAACACGTTTATTCATGGGTTATGCGACTTTCCCATTTGTGTTACTT
GAATTTGGAGTCAGCATTCGATTGTACCTGAGATTTTTCATGTGCCTTCATTTTGTTGCT
CTGTTCACCATATACGTTCTTCCTAAATTGGTGCGCGGTAGCAGCGATGGAAAACGTTTG
ACTACATCAGTGAATGCTGGATTAAATAAAAATAATAATGAAAATACGACAATTGATGAT
AATAGCCCAAAAAACGACGACTCTGTGGCAACTAAAGAGAGAAAAACTGTCACAGCAATT
GCAGCGACAAAGAAAGTTCATGAAAAAGAGTTGAAAAATGTAAATAGTACTTGCAGCAGT
TTTAATAGCAGTATGAGTGACATTAGTGATAAAATGCATGTTCGAAAAACAGACACTAAT
TATCTACTAAAGGATCTTATTAGTAACAAAATAAAGGACGAAACTGACAATTTATCGAAT
CTATTGAAAGAGAAAATTGAAGCAGCTAATATTGAAGGATTAATTGATAAAACTGTCAGC
GGAATTGTTGAATTGAAAGATGATCTAATGCGTATGAATGAGCCAGAAGTCTATGGACCA
ACAAGTGCTGAAACATTGAGAAAGAGAAACATTGTTGAAAGCGAAATCGTTGATGGTTGT
GGAGGTGTTGATGCTTTTCTTAAGAAAGAAATTGATGCAATCAAGAAAGAGGCTGCTGTA
ATTCCAGCTGTTTTAAGTAATGGTCATGCTAAATAA
>g8921.t17 Gene=g8921 Length=671
MTNKLDIEIGEESGYEGSKVFVSLADAIGLSVDLTNFLITQGLALLLASLFRSYLHPSKV
TASVRHAFGLVIGLLFGYFCFGLQAVHIAGLPAICYIVLRTQNPMIVQRIVMAVALTYLS
CIHLHRQYNSNGAYTLDITGPLMIITQKVTSLAFSIHDGFLLKKEKQLSKNQQYHVIEKV
PTPLEYFSYVLNFQSLMAGPLVFYRDYIDFIEGCNMITKSNSNGKLDERKQIHEPSPTKA
VLKKVLASVVCAYIFVKLINVYPIKNMKDDSFINDANVFYKFWYIMMATMAVRFKYYFAW
MFAEAIVNNAGLGFNGYENDGTAKWDMLTNIYLGTNFRDCINSWNIGTNSWLRMVVYERV
HKNYGTGLTFALSALWHGFYPGYYLTFATGALIVTAARKARRMFRHRFQETELSRTFYDV
ITCIVTRLFMGYATFPFVLLEFGVSIRLYLRFFMCLHFVALFTIYVLPKLVRGSSDGKRL
TTSVNAGLNKNNNENTTIDDNSPKNDDSVATKERKTVTAIAATKKVHEKELKNVNSTCSS
FNSSMSDISDKMHVRKTDTNYLLKDLISNKIKDETDNLSNLLKEKIEAANIEGLIDKTVS
GIVELKDDLMRMNEPEVYGPTSAETLRKRNIVESEIVDGCGGVDAFLKKEIDAIKKEAAV
IPAVLSNGHAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g8921.t17 | Coils | Coil | Coil | 564 | 584 | - |
| 13 | g8921.t17 | Coils | Coil | Coil | 670 | 671 | - |
| 10 | g8921.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 504 | - |
| 11 | g8921.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 511 | - |
| 2 | g8921.t17 | PANTHER | PTHR13906 | PORCUPINE | 15 | 468 | 2.6E-146 |
| 1 | g8921.t17 | Pfam | PF03062 | MBOAT, membrane-bound O-acyltransferase family | 46 | 433 | 3.3E-38 |
| 20 | g8921.t17 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 33 | - |
| 28 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 55 | - |
| 15 | g8921.t17 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 56 | 66 | - |
| 31 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 67 | 99 | - |
| 23 | g8921.t17 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 100 | 104 | - |
| 25 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 124 | - |
| 14 | g8921.t17 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 125 | 135 | - |
| 27 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 136 | 156 | - |
| 21 | g8921.t17 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 157 | 244 | - |
| 30 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 245 | 262 | - |
| 18 | g8921.t17 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 263 | 281 | - |
| 32 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 303 | - |
| 19 | g8921.t17 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 304 | 377 | - |
| 24 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 378 | 397 | - |
| 16 | g8921.t17 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 398 | 416 | - |
| 26 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 417 | 440 | - |
| 22 | g8921.t17 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 441 | 445 | - |
| 29 | g8921.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 446 | 467 | - |
| 17 | g8921.t17 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 468 | 671 | - |
| 9 | g8921.t17 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 55 | - |
| 5 | g8921.t17 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 90 | - |
| 7 | g8921.t17 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 124 | - |
| 4 | g8921.t17 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 318 | - |
| 8 | g8921.t17 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 374 | 396 | - |
| 3 | g8921.t17 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 417 | 439 | - |
| 6 | g8921.t17 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 449 | 471 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
