General information for g8921.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Membrane-bound O-acyltransferase domain-containing protein 2.
Parent gene
- The parent gene g8921 is located on chr_2: 33818501..33819010 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8921 | g8921.t18 | isoform | g8921.t18 | 33817191 | 33818501 |
| chr_2 | g8921 | g8921.t18 | exon | g8921.t18.exon1 | 33817191 | 33817357 |
| chr_2 | g8921 | g8921.t18 | cds | g8921.t18.CDS1 | 33817277 | 33817357 |
| chr_2 | g8921 | g8921.t18 | exon | g8921.t18.exon2 | 33817420 | 33817555 |
| chr_2 | g8921 | g8921.t18 | cds | g8921.t18.CDS2 | 33817420 | 33817555 |
| chr_2 | g8921 | g8921.t18 | exon | g8921.t18.exon3 | 33817621 | 33817826 |
| chr_2 | g8921 | g8921.t18 | cds | g8921.t18.CDS3 | 33817621 | 33817826 |
| chr_2 | g8921 | g8921.t18 | exon | g8921.t18.exon4 | 33817881 | 33818081 |
| chr_2 | g8921 | g8921.t18 | cds | g8921.t18.CDS4 | 33817881 | 33818081 |
| chr_2 | g8921 | g8921.t18 | exon | g8921.t18.exon5 | 33818137 | 33818268 |
| chr_2 | g8921 | g8921.t18 | cds | g8921.t18.CDS5 | 33818137 | 33818268 |
| chr_2 | g8921 | g8921.t18 | exon | g8921.t18.exon6 | 33818324 | 33818501 |
| chr_2 | g8921 | g8921.t18 | cds | g8921.t18.CDS6 | 33818324 | 33818500 |
| chr_2 | g8921 | g8921.t18 | TTS | g8921.t18 | 33819275 | 33819275 |
| chr_2 | g8921 | g8921.t18 | TSS | g8921.t18 | NA | NA |
Sequences
>g8921.t18 Gene=g8921 Length=1020
TTTCAAAGAATCAGCAATATCATGTGATTGAGAAAGTGCCGACACCACTAGAATATTTTT
CATATGTTCTTAATTTTCAAAGTCTCATGGCTGGTCCGTTGGTTTTCTATCGAGACTATA
TTGATTTTATCGAAGGATGTAACATGATTACTAAATCCAACTCAAATGGAAAATTGGATG
AGAGAAAACAAATTCATGAACCATCACCAACAAAAGCTGTTTTGAAAAAAGTTCTCGCCA
GTGTTGTTTGTGCTTACATCTTTGTCAAATTGATTAACGTTTATCCAATTAAAAATATGA
AAGATGATTCTTTTATCAATGATGCAAATGTATTTTATAAATTTTGGTACATCATGATGG
CCACAATGGCAGTTCGTTTTAAATATTATTTTGCTTGGATGTTCGCTGAAGCAATAGTCA
ATAACGCTGGTCTTGGTTTTAATGGTTATGAAAATGATGGTACAGCTAAATGGGATATGT
TGACAAACATTTATGTGATACCTTTTGAGTTGGGAACAAATTTTCGTGATTGTATTAACA
GTTGGAATATTGGAACAAATTCTTGGCTTCGCATGGTTGTATATGAACGTGTACATAAGA
ATTATGGAACGGGTTTAACATTTGCATTGTCAGCTTTATGGCATGGCTTCTATCCGGGCT
ATTATTTGACATTTGCAACTGGCGCTCTTATTGTGACTGCTGCTCGAAAGGCAAGAAGAA
TGTTCCGTCATCGATTCCAAGAGACGGAATTATCAAGAACTTTCTATGATGTAATTACAT
GCATTGTAACACGTTTATTCATGGGTTATGCGACTTTCCCATTTGTGTTACTTGAATTTG
GAGTCAGCATTCGATTGTACCTGAGATTTTTCATGTGCCTTCATTTTGTTGCTCTGTTCA
CCATATACGTTCTTCCTAAATTGGTGCGCGGTAGCAGCGATGGAAAACGTTTGACTACAT
CAGTGAATGCTGGATTAAATAAAAATAATAATGAAAATACGACAATTGATGATAATAGCC
>g8921.t18 Gene=g8921 Length=311
MAGPLVFYRDYIDFIEGCNMITKSNSNGKLDERKQIHEPSPTKAVLKKVLASVVCAYIFV
KLINVYPIKNMKDDSFINDANVFYKFWYIMMATMAVRFKYYFAWMFAEAIVNNAGLGFNG
YENDGTAKWDMLTNIYVIPFELGTNFRDCINSWNIGTNSWLRMVVYERVHKNYGTGLTFA
LSALWHGFYPGYYLTFATGALIVTAARKARRMFRHRFQETELSRTFYDVITCIVTRLFMG
YATFPFVLLEFGVSIRLYLRFFMCLHFVALFTIYVLPKLVRGSSDGKRLTTSVNAGLNKN
NNENTTIDDNS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8921.t18 | PANTHER | PTHR13906 | PORCUPINE | 1 | 275 | 1.9E-90 |
| 3 | g8921.t18 | PANTHER | PTHR13906:SF4 | OYSGEDART, ISOFORM A | 1 | 275 | 1.9E-90 |
| 1 | g8921.t18 | Pfam | PF03062 | MBOAT, membrane-bound O-acyltransferase family | 2 | 242 | 3.9E-32 |
| 12 | g8921.t18 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 48 | - |
| 18 | g8921.t18 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 49 | 66 | - |
| 11 | g8921.t18 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 67 | 85 | - |
| 15 | g8921.t18 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 86 | 107 | - |
| 14 | g8921.t18 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 108 | 186 | - |
| 19 | g8921.t18 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 187 | 206 | - |
| 10 | g8921.t18 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 207 | 225 | - |
| 17 | g8921.t18 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 226 | 249 | - |
| 13 | g8921.t18 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 250 | 254 | - |
| 16 | g8921.t18 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 276 | - |
| 9 | g8921.t18 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 277 | 311 | - |
| 8 | g8921.t18 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 49 | 68 | - |
| 4 | g8921.t18 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 100 | 122 | - |
| 5 | g8921.t18 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 183 | 205 | - |
| 7 | g8921.t18 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 226 | 248 | - |
| 6 | g8921.t18 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 258 | 280 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
