General information for g8923.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dendritic arbor reduction protein 1.
Parent gene
- The parent gene g8923 is located on chr_2: 33846718..33869853 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8923 | g8923.t2 | isoform | g8923.t2 | 33840367 | 33869853 |
| chr_2 | g8923 | g8923.t2 | exon | g8923.t2.exon1 | 33840367 | 33840557 |
| chr_2 | g8923 | g8923.t2 | cds | g8923.t2.CDS1 | 33840367 | 33840557 |
| chr_2 | g8923 | g8923.t2 | exon | g8923.t2.exon2 | 33843489 | 33843548 |
| chr_2 | g8923 | g8923.t2 | cds | g8923.t2.CDS2 | 33843489 | 33843548 |
| chr_2 | g8923 | g8923.t2 | exon | g8923.t2.exon3 | 33846718 | 33847171 |
| chr_2 | g8923 | g8923.t2 | cds | g8923.t2.CDS3 | 33846718 | 33847171 |
| chr_2 | g8923 | g8923.t2 | exon | g8923.t2.exon4 | 33847254 | 33847945 |
| chr_2 | g8923 | g8923.t2 | cds | g8923.t2.CDS4 | 33847254 | 33847945 |
| chr_2 | g8923 | g8923.t2 | exon | g8923.t2.exon5 | 33848016 | 33848205 |
| chr_2 | g8923 | g8923.t2 | cds | g8923.t2.CDS5 | 33848016 | 33848205 |
| chr_2 | g8923 | g8923.t2 | exon | g8923.t2.exon6 | 33869800 | 33869853 |
| chr_2 | g8923 | g8923.t2 | cds | g8923.t2.CDS6 | 33869800 | 33869853 |
| chr_2 | g8923 | g8923.t2 | TSS | g8923.t2 | 33870436 | 33870436 |
| chr_2 | g8923 | g8923.t2 | TTS | g8923.t2 | NA | NA |
Sequences
>g8923.t2 Gene=g8923 Length=1641
ATGGATGCAGTAGGCGATCAAATCGTTCCATCATCAAATTTCTATGTAATGCAGTCAACT
GACATTGAATTTCGGCATGAACTGATGAATCGTTTGAACAAATTAGATACGGATGTTGAA
TTGGAAATTCTTCCAAGTCAGCAAAATAATTCAGTGTCGCCATCATCGTCAGCTGCAACA
ACAACGGCGACAGTTTATGGAGGAAGCTATGAAAGCTATGGAAATGTCAAAGAGTATTAT
TGTGGCAATACAAAACGAGAGCCATCATGCTCAGAAAATGACATCGATCCGTTCCTTAGG
CCGCCATTATGGGAAGATATTACGAGTTCAATACAAAATATCGATCCCGAAAATGCCATC
ATGTTAAGCGCTTTAACTGGTGCTACACAAGTAAAACTTGAATCTTCCGATGATACTTTT
CTCGAGTCTCTTTCTTCACCTCTTCTTAGTCCATTAGAAATTAAAACTGAAAAAGGCTAC
TATCAACAGCAGCAGCAACAAACAGTTCATATCAACAATAATAATATTATTCATCTGAGT
CACTTAGGTCATAATAATAATAATAACAACAACAATGCTGCAACAAATAACAACAACAAT
AATTCATATACAGTACAATCGCATTATAATTCGCAAGCTCATTCCAATCATCATCATCAT
CAGTTAAATGGCTATCATCATCAAGATTTCAATGTTCATCATCATGCACACGTGCCACCA
TCTCATCAACAGTATTCAAACAACTACTATAATTGGCAGCAAAACTCTCATCATCACCAT
CATGCTGTAAATCAACAAAATGCTGCTACTGCTCCTATATATGGTAACAAATATTCATCT
CAAAGCAATTTATGTGCTCCAATTAGTCGATTGATGTATGTACCTCCGCTAACACCACCA
TCAAGTGATCCTGGCAGTCCCGGAAATTCTATTCAAGGTCCTGGATTACGAAGGACACCG
CCTCCACCTTATCATATTCAACAACAACAGCAGCATCTCATGCAAAATATAGCAATTAAT
AATAGTAATAACAATCAATCATCACCTCAGCTCTCTTCACTATCACATCAGCAACAACAC
CCTCATCAGCAGCCTTCGAATGCTCCTGCGTGTCTGACAATTTTAAACAACAATGGTAAT
TCAAATGACAACAATAATAACCTGAGCAACATAAAGAGTGAAAATATAACAAATAACAAT
GTTAATAGCAGCAACAATAGGAGTAATAGTAATAAGATAATTATAAAGAAAACATCAACA
ACCACCATTACTACCAATCATTCATCAATAATATTAACAAGTTCGGGCGTAAAAACAATT
GTTGGTAGATATAATCGTCGAAATAATCCCGAATTGGAAAAACGACGTATTCATCATTGT
GATTTTATTGGTTGTTCAAAAGTTTATACGAAATCATCGCATTTGAAAGCTCATCAAAGA
ATTCATACCGGAGAAAAACCGTACTCTTGTCAATGGCCGGAATGTGAATGGAGATTTGCA
CGTAGCGATGAATTAACACGTCATTATCGCAAACATACTGGGGCTAAGCCATTTAAATGT
GTCGTATGTGAGAGATCTTTTGCAAGAAGTGATCATTTAGCACTGCATATGAAACGTCAT
CTACCGAAGAACAACAAATGA
>g8923.t2 Gene=g8923 Length=546
MDAVGDQIVPSSNFYVMQSTDIEFRHELMNRLNKLDTDVELEILPSQQNNSVSPSSSAAT
TTATVYGGSYESYGNVKEYYCGNTKREPSCSENDIDPFLRPPLWEDITSSIQNIDPENAI
MLSALTGATQVKLESSDDTFLESLSSPLLSPLEIKTEKGYYQQQQQQTVHINNNNIIHLS
HLGHNNNNNNNNAATNNNNNNSYTVQSHYNSQAHSNHHHHQLNGYHHQDFNVHHHAHVPP
SHQQYSNNYYNWQQNSHHHHHAVNQQNAATAPIYGNKYSSQSNLCAPISRLMYVPPLTPP
SSDPGSPGNSIQGPGLRRTPPPPYHIQQQQQHLMQNIAINNSNNNQSSPQLSSLSHQQQH
PHQQPSNAPACLTILNNNGNSNDNNNNLSNIKSENITNNNVNSSNNRSNSNKIIIKKTST
TTITTNHSSIILTSSGVKTIVGRYNRRNNPELEKRRIHHCDFIGCSKVYTKSSHLKAHQR
IHTGEKPYSCQWPECEWRFARSDELTRHYRKHTGAKPFKCVVCERSFARSDHLALHMKRH
LPKNNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8923.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 447 | 484 | 6.3E-11 |
| 7 | g8923.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 486 | 510 | 6.4E-14 |
| 8 | g8923.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 511 | 546 | 3.2E-11 |
| 16 | g8923.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 366 | - |
| 4 | g8923.t2 | PANTHER | PTHR23235:SF100 | DENDRITIC ARBOR REDUCTION PROTEIN 1 | 47 | 544 | 6.1E-113 |
| 5 | g8923.t2 | PANTHER | PTHR23235 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR | 47 | 544 | 6.1E-113 |
| 2 | g8923.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 458 | 482 | 0.012 |
| 1 | g8923.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 488 | 512 | 7.6E-4 |
| 3 | g8923.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 518 | 540 | 3.2E-5 |
| 11 | g8923.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 460 | 482 | - |
| 10 | g8923.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 490 | 512 | - |
| 12 | g8923.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 520 | 540 | - |
| 19 | g8923.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 458 | 487 | 15.251 |
| 18 | g8923.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 488 | 517 | 14.378 |
| 17 | g8923.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 518 | 545 | 11.157 |
| 14 | g8923.t2 | SMART | SM00355 | c2h2final6 | 458 | 482 | 0.073 |
| 13 | g8923.t2 | SMART | SM00355 | c2h2final6 | 488 | 512 | 0.0023 |
| 15 | g8923.t2 | SMART | SM00355 | c2h2final6 | 518 | 540 | 0.0038 |
| 6 | g8923.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 469 | 527 | 1.27E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K09206 (krueppel-like factor 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed