General information for g8923.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8923 is located on chr_2: 33846718..33869853 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8923 | g8923.t3 | isoform | g8923.t3 | 33846718 | 33847945 |
| chr_2 | g8923 | g8923.t3 | exon | g8923.t3.exon1 | 33846718 | 33847189 |
| chr_2 | g8923 | g8923.t3 | cds | g8923.t3.CDS1 | 33846719 | 33847189 |
| chr_2 | g8923 | g8923.t3 | exon | g8923.t3.exon2 | 33847254 | 33847945 |
| chr_2 | g8923 | g8923.t3 | cds | g8923.t3.CDS2 | 33847254 | 33847829 |
| chr_2 | g8923 | g8923.t3 | TSS | g8923.t3 | NA | NA |
| chr_2 | g8923 | g8923.t3 | TTS | g8923.t3 | NA | NA |
Sequences
>g8923.t3 Gene=g8923 Length=1164
GCAATACAAAACGAGAGCCATCATGCTCAGAAAATGACATCGATCCGTTCCTTAGGCCGC
CATTATGGGAAGATATTACGAGTTCAATACAAAATATCGATCCCGAAAATGCCATCATGT
TAAGCGCTTTAACTGGTGCTACACAAGTAAAACTTGAATCTTCCGATGATACTTTTCTCG
AGTCTCTTTCTTCACCTCTTCTTAGTCCATTAGAAATTAAAACTGAAAAAGGCTACTATC
AACAGCAGCAGCAACAAACAGTTCATATCAACAATAATAATATTATTCATCTGAGTCACT
TAGGTCATAATAATAATAATAACAACAACAATGCTGCAACAAATAACAACAACAATAATT
CATATACAGTACAATCGCATTATAATTCGCAAGCTCATTCCAATCATCATCATCATCAGT
TAAATGGCTATCATCATCAAGATTTCAATGTTCATCATCATGCACACGTGCCACCATCTC
ATCAACAGTATTCAAACAACTACTATAATTGGCAGCAAAACTCTCATCATCACCATCATG
CTGTAAATCAACAAAATGCTGCTACTGCTCCTATATATGGTAACAAATATTCATCTCAAA
GCAATTTATGTGCTCCAATTAGTCGATTGATGTATGTACCTCCGCTAACACCACCATCAA
GTGATCCTGGCAGTCCCGGAAATTCTATTCAACGTGCCAATCGTTTTCAGGGTCCTGGAT
TACGAAGGACACCGCCTCCACCTTATCATATTCAACAACAACAGCAGCATCTCATGCAAA
ATATAGCAATTAATAATAGTAATAACAATCAATCATCACCTCAGCTCTCTTCACTATCAC
ATCAGCAACAACACCCTCATCAGCAGCCTTCGAATGCTCCTGCGTGTCTGACAATTTTAA
ACAACAATGGTAATTCAAATGACAACAATAATAACCTGAGCAACATAAAGAGTGAAAATA
TAACAAATAACAATGTTAATAGCAGCAACAATAGGAGTAATAGTAATAAGATAATTATAA
AGAAAACATCAACAACCACCATTACTACCAATCATTCATCAATAATATTAACAAGTTCGG
GCGTAAAAACAATTGTTGGTAGATATAATCGTCGAAATAATCCCGAATTGGAAAAACGAC
GTATTCATCATTGTGATTTTATTG
>g8923.t3 Gene=g8923 Length=349
MLSALTGATQVKLESSDDTFLESLSSPLLSPLEIKTEKGYYQQQQQQTVHINNNNIIHLS
HLGHNNNNNNNNAATNNNNNNSYTVQSHYNSQAHSNHHHHQLNGYHHQDFNVHHHAHVPP
SHQQYSNNYYNWQQNSHHHHHAVNQQNAATAPIYGNKYSSQSNLCAPISRLMYVPPLTPP
SSDPGSPGNSIQRANRFQGPGLRRTPPPPYHIQQQQQHLMQNIAINNSNNNQSSPQLSSL
SHQQQHPHQQPSNAPACLTILNNNGNSNDNNNNLSNIKSENITNNNVNSSNNRSNSNKII
IKKTSTTTITTNHSSIILTSSGVKTIVGRYNRRNNPELEKRRIHHCDFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g8923.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 252 | - |
| 1 | g8923.t3 | PANTHER | PTHR23235:SF100 | DENDRITIC ARBOR REDUCTION PROTEIN 1 | 7 | 349 | 2.5E-15 |
| 2 | g8923.t3 | PANTHER | PTHR23235 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR | 7 | 349 | 2.5E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed