General information for g8929.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8929 is located on chr_2: 33894769..33895840 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8929 | g8929.t11 | isoform | g8929.t11 | 33894381 | 33895489 |
| chr_2 | g8929 | g8929.t11 | exon | g8929.t11.exon1 | 33894381 | 33895255 |
| chr_2 | g8929 | g8929.t11 | cds | g8929.t11.CDS1 | 33894382 | 33895143 |
| chr_2 | g8929 | g8929.t11 | TTS | g8929.t11 | 33894720 | 33894720 |
| chr_2 | g8929 | g8929.t11 | exon | g8929.t11.exon2 | 33895407 | 33895489 |
| chr_2 | g8929 | g8929.t11 | TSS | g8929.t11 | 33895486 | 33895486 |
Sequences
>g8929.t11 Gene=g8929 Length=958
TTTGTTGTCATCATTGAAAGAGTGAAGAACGAATGATTTTTTGAAAAATACTGAAATAAC
TAAAGATATTGCTTGTAAAGTAAAAAATATGTAGTAATTTTAACATGTATTCTTTATTTA
TAGGCAGCAAAACGAAGACGTCAACGAGCAAAACGAAAAGATAAAATAAGAGATTCAAAA
CCAATATTTGGAGAAATGGAGTCCCAACAAGAAAAATCAAAAGAACAAATTTTGGCAGAA
AGAAAAGCCAAAAAAGCTGCCAAAAAGCAAGGAAATAAAAAAGAAGAAACTCCAATTGTT
CCTCCTCTTGCTGCTGCTGTTTCTGCTCATTCATTGTTGCCAACCAAAACAGAAAATCAA
TCAACTTCTGTTAATGTTGACAAAGAGATAAAAGATGTGCAATCAGAAAAGCCTAAAGAA
GCTGAAAAAAAATCTAGAGAAGAAGTTCTGGCCGAACGTGAGACGAAAAAATTAGCGAAA
CAAGCTGGAAAGAAAAAGAATGTTGAAGTTGCAAAAGACGACGAGAATAAACAGCAATCA
AAGCCAAAAGAAGTTGAAAAGACAAATTCAGATACAGATCTTGCACAAAAAATGGAAAAA
CTTCATATAACAAATAAAGAAAATGAAAAAGAAAATAAGCCGCAAACACCTGATGATAAA
AATCCCGAAAAAGGTAAACCAATGACTAAAGCAGAACGGCGAGCTCTTCAAGAAGCACAA
CGTGCAGCAAAAGCCAAACTAATGGCAGAAAAAAATAAACCTACAACATCCAGTACTGGT
AGTAGTACTGAAAAGAAAATAATGATAGATAAAAAAGAAACAAAGACTAAGGAAACAAGT
CATAAAACTGCATCAATAATTTCACAAAAATCATCTTCATTACATAAAGTGAGACTATTT
AAACATCTCTACACCGAAAAATGCAATTTTAATATAAAAGTCAATAGTAGTTTTCATC
>g8929.t11 Gene=g8929 Length=254
MESQQEKSKEQILAERKAKKAAKKQGNKKEETPIVPPLAAAVSAHSLLPTKTENQSTSVN
VDKEIKDVQSEKPKEAEKKSREEVLAERETKKLAKQAGKKKNVEVAKDDENKQQSKPKEV
EKTNSDTDLAQKMEKLHITNKENEKENKPQTPDDKNPEKGKPMTKAERRALQEAQRAAKA
KLMAEKNKPTTSSTGSSTEKKIMIDKKETKTKETSHKTASIISQKSSSLHKVRLFKHLYT
EKCNFNIKVNSSFH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8929.t11 | Coils | Coil | Coil | 168 | 188 | - |
| 1 | g8929.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - |
| 3 | g8929.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 225 | - |
| 2 | g8929.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 63 | - |
| 5 | g8929.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 183 | - |
| 4 | g8929.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 215 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
