General information for g8929.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Translation initiation factor eIF-2B subunit delta.
Parent gene
- The parent gene g8929 is located on chr_2: 33894769..33895840 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8929 | g8929.t3 | TTS | g8929.t3 | 33893205 | 33893205 |
| chr_2 | g8929 | g8929.t3 | isoform | g8929.t3 | 33893292 | 33894229 |
| chr_2 | g8929 | g8929.t3 | exon | g8929.t3.exon1 | 33893292 | 33893987 |
| chr_2 | g8929 | g8929.t3 | cds | g8929.t3.CDS1 | 33893292 | 33893756 |
| chr_2 | g8929 | g8929.t3 | exon | g8929.t3.exon2 | 33894050 | 33894229 |
| chr_2 | g8929 | g8929.t3 | TSS | g8929.t3 | NA | NA |
Sequences
>g8929.t3 Gene=g8929 Length=876
TTAATTAAAGACTTTACAACACCTTCAGAAAAAGTTTTTTATCGAGCTCTTGAAAGTGAA
ATTCAAAAGTCTGTTGAATTTCTTCACAAGTGCCGACCACTCGCTGTATCAGTTTCGAAT
GCCTTGAAATATATTAAACTTATTATATCGCAAGAAAATTCATCAGACAGTGATGATGAG
AAAAAAGGGAGAATTATTGACAAAATAGAAACATATGCACATGAACAGATTGAAACAGCT
GCTCGATCGATTAGTTTAAAAGTTAGGGAAAAGATTTCAGATGATGATGTTATTCTTACT
TTTGGTTATTCATCTTTAATTAAGAGGACACTAGTTGAAAGTTGGAAATCTGGAGAGAAA
AAATTCAGTATAATTGTTGTTGATTCTCGACCCGATTTTGAAGGTCGTGAGATGCTTGAT
TCACTTGCCAAGGAAGGAATTTGCTGTACTTATGTGTTTATAAATGCAACTAGTTTTGTA
ATGCCAAAAGTTACAAAAGTTCTACTTGGTGCACATGCTCTTTTGGCAAACGGCTACGTA
ATGTCTCGTGTAGGAACTGCCCAAATTTCAATGATAGCTAGCTTCTATAATGTTCCTGTA
TTGGTTTGCTGTGAAACTCATAAATTCAGTGAACGTGTTCAAACTGATTCATTTGTGTAT
AATGAAATTGGTGATCCAAATGCATTAGTTGTCAACAAAAATTCAATGAAACCATACGAA
CATCTCAAAGATTGGGAATCTATACCACATTTGACGCCTCTTAATCTCAGATATGATATA
ACACCTCCAGAACTCGTAACTGCCGTGGTAACTGAAATCGCTCTTCTTCCATGTACTAGT
GTCCAAGTTATATTACGTGTAAAACCATCAGAATAA
>g8929.t3 Gene=g8929 Length=154
MLDSLAKEGICCTYVFINATSFVMPKVTKVLLGAHALLANGYVMSRVGTAQISMIASFYN
VPVLVCCETHKFSERVQTDSFVYNEIGDPNALVVNKNSMKPYEHLKDWESIPHLTPLNLR
YDITPPELVTAVVTEIALLPCTSVQVILRVKPSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8929.t3 | Gene3D | G3DSA:3.40.50.10470 | - | 1 | 149 | 0 |
| 2 | g8929.t3 | PANTHER | PTHR10233:SF14 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT DELTA | 1 | 152 | 0 |
| 3 | g8929.t3 | PANTHER | PTHR10233 | TRANSLATION INITIATION FACTOR EIF-2B | 1 | 152 | 0 |
| 1 | g8929.t3 | Pfam | PF01008 | Initiation factor 2 subunit family | 1 | 140 | 0 |
| 4 | g8929.t3 | SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | 4 | 149 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0044237 | cellular metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
