General information for g893.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g893 is located on chr_3: 6740137..6749017 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g893 | g893.t1 | isoform | g893.t1 | 6740137 | 6749017 |
| chr_3 | g893 | g893.t1 | exon | g893.t1.exon1 | 6740137 | 6740325 |
| chr_3 | g893 | g893.t1 | cds | g893.t1.CDS1 | 6740137 | 6740325 |
| chr_3 | g893 | g893.t1 | exon | g893.t1.exon2 | 6741290 | 6741576 |
| chr_3 | g893 | g893.t1 | cds | g893.t1.CDS2 | 6741290 | 6741576 |
| chr_3 | g893 | g893.t1 | exon | g893.t1.exon3 | 6744411 | 6744494 |
| chr_3 | g893 | g893.t1 | cds | g893.t1.CDS3 | 6744411 | 6744494 |
| chr_3 | g893 | g893.t1 | exon | g893.t1.exon4 | 6744552 | 6744652 |
| chr_3 | g893 | g893.t1 | cds | g893.t1.CDS4 | 6744552 | 6744652 |
| chr_3 | g893 | g893.t1 | exon | g893.t1.exon5 | 6747972 | 6748091 |
| chr_3 | g893 | g893.t1 | cds | g893.t1.CDS5 | 6747972 | 6748091 |
| chr_3 | g893 | g893.t1 | exon | g893.t1.exon6 | 6748150 | 6748369 |
| chr_3 | g893 | g893.t1 | cds | g893.t1.CDS6 | 6748150 | 6748369 |
| chr_3 | g893 | g893.t1 | exon | g893.t1.exon7 | 6748993 | 6749017 |
| chr_3 | g893 | g893.t1 | cds | g893.t1.CDS7 | 6748993 | 6749017 |
| chr_3 | g893 | g893.t1 | TSS | g893.t1 | NA | NA |
| chr_3 | g893 | g893.t1 | TTS | g893.t1 | NA | NA |
Sequences
>g893.t1 Gene=g893 Length=1026
ATGACTTTCACAGATGATGAAGTTAGAATTGGAGTAGTTTTAGTAACAATAAGTGGAGTT
GCATGGCGAATAACGACAGCTGATGGTTCAGCATGTTTTGGTATGGAAGGAACTGAATTT
GATCATTGTGGTCGGCAACAATGTTTAAGAAATAACAGCATGTCACATGGACTTCTTTAT
CCTGAATTTCAACATCGACAACCGCCACCAACTTATCAAGCAAGCATGCAGGAATATCGA
TTGAGACTGTTACTTTTGGATCGTGATAGATCACATGGTAGGAGAATTGTTAATGCAGTA
AGCAATCCACAATCATCATCTTCACCACCTCCAACTTATCGATCAAATACTGGATCACAA
TTAAGGTCAACATCAGATCGTTCTGGTAAAGATTGTTGCGGTCAGTGGTTTAACGGGCCT
CCATTGAGATTTCTTGTGGCTCTTGTCGCTCTTGGTCGTGTTGCATGCACACTTGGTGGC
GCAACTTTGGGATCAATAGCATTGGCTGGTTCACCAACATCTCATCTAACTGCTGGACTG
CTCATGACTGATAATGAAAAATGTTGTCGTTTACAACTGGAAGTTTTTTATAATTTAATT
AAATTTGGTGCATATTTGAATGGTGCATTTTTACAAATTTTTCTGTTGAGCTTTTTCTGT
GAGAAATTGCGAACATCGAGTGAAAATATTGCAAAGAAAATTGCAAACAGCAACTGGTAC
ATGTGCAAGGATATTGGTATGAAAAAGAATTATCAAATGGTTCTTTTGAAGGCTCAACAA
CCTGTCGAATTGACAGCATTGAATTTTTTGGAATCAACATTGAAATTTTTTACACATATG
GAAACTTGGTTCAATTATGAAGACTTGTCACCGAAACCTGATGCAACACCAGATGACTCA
ATTGCAAGAAATTTTAATGAAAATTCAACTCAAATTGAGACAACAACAAGGAGTGAAAAT
GAAGTGAGAAAAAGAAGAAATTTAGCAGATTCAATGTTTACAACAAGAAAGGAATTTATC
GATTGA
>g893.t1 Gene=g893 Length=341
MTFTDDEVRIGVVLVTISGVAWRITTADGSACFGMEGTEFDHCGRQQCLRNNSMSHGLLY
PEFQHRQPPPTYQASMQEYRLRLLLLDRDRSHGRRIVNAVSNPQSSSSPPPTYRSNTGSQ
LRSTSDRSGKDCCGQWFNGPPLRFLVALVALGRVACTLGGATLGSIALAGSPTSHLTAGL
LMTDNEKCCRLQLEVFYNLIKFGAYLNGAFLQIFLLSFFCEKLRTSSENIAKKIANSNWY
MCKDIGMKKNYQMVLLKAQQPVELTALNFLESTLKFFTHMETWFNYEDLSPKPDATPDDS
IARNFNENSTQIETTTRSENEVRKRRNLADSMFTTRKEFID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g893.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 121 | - |
| 3 | g893.t1 | PANTHER | PTHR37002:SF10 | AGAP007005-PA | 10 | 125 | 4.8E-31 |
| 5 | g893.t1 | PANTHER | PTHR37002 | AGAP007005-PA | 10 | 125 | 4.8E-31 |
| 2 | g893.t1 | PANTHER | PTHR37002:SF10 | AGAP007005-PA | 125 | 182 | 4.8E-31 |
| 4 | g893.t1 | PANTHER | PTHR37002 | AGAP007005-PA | 125 | 182 | 4.8E-31 |
| 1 | g893.t1 | Pfam | PF02949 | 7tm Odorant receptor | 197 | 279 | 7.6E-13 |
| 7 | g893.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 143 | - |
| 11 | g893.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 144 | 169 | - |
| 9 | g893.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 170 | 201 | - |
| 10 | g893.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 202 | 220 | - |
| 8 | g893.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 221 | 341 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0007608 | sensory perception of smell | BP |
| GO:0005549 | odorant binding | MF |
| GO:0004984 | olfactory receptor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed