Gene loci information

Transcript annotation

  • This transcript has been annotated as 2-acylglycerol O-acyltransferase 2-A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g895 g895.t13 TTS g895.t13 6753915 6753915
chr_3 g895 g895.t13 isoform g895.t13 6753944 6755526
chr_3 g895 g895.t13 exon g895.t13.exon1 6753944 6754251
chr_3 g895 g895.t13 cds g895.t13.CDS1 6753944 6754251
chr_3 g895 g895.t13 exon g895.t13.exon2 6754308 6754452
chr_3 g895 g895.t13 cds g895.t13.CDS2 6754308 6754452
chr_3 g895 g895.t13 exon g895.t13.exon3 6754509 6754743
chr_3 g895 g895.t13 cds g895.t13.CDS3 6754509 6754743
chr_3 g895 g895.t13 exon g895.t13.exon4 6754798 6754929
chr_3 g895 g895.t13 cds g895.t13.CDS4 6754798 6754929
chr_3 g895 g895.t13 exon g895.t13.exon5 6755112 6755526
chr_3 g895 g895.t13 cds g895.t13.CDS5 6755112 6755158
chr_3 g895 g895.t13 TSS g895.t13 6755612 6755612

Sequences

>g895.t13 Gene=g895 Length=1235
ATGAAGAACTTAAAATCGATTTTGTCATCATCGGCATTAACGCCAACGGTGAATCGCTAT
TTGGAAGTACTCAGTGCATTGCTCTTTGGCTACATTGTGTTTTTTATTGAAGTGTCATGT
GCTTACATTGTGTATCGAATGATTGTAAGTAAAAATCCATTTTTAATGCTGAAAATTTCT
AAATATTTTTGTTGCTTATTAGGCAGTTCATGGTCGTTCATTACTTGATTATTGCGCAAT
TTTTAAAAAAAAATTATTATTGTTTGACTCTCCTTAAATTTTTTTTCTACTTTTTCTCTC
ATTCTCTTTTTTTTAAGGTTTATGGTGGGACAATTACTCATCTTTTTCTCGCCGGTTATT
TCATTTTCATGTTTGTTGATAGAAATGCTGATAATGACTGCAGTCGAGGTCAAGGGTCAG
ACTGGATTCGTAATTTAAAATGTTTCAAATATTTTGCCAATTATTTTCCTGTGAAACTTA
TCAAAACTGCTCATTTGCCGCCAAATAAAAATTATTTATTCGCCTGCTATCCACATGGAG
TTATTGGCTGTGGCTATTTTGCAAATTTCGTGACTCATGGAACAAACTTTCATCAACTAT
TTCCTGGAATTCGGTCACGTGTTGTGTCACTTACTTATCACTTTTACATTCCATTTTATC
GTGAATTAGTTTTAGCATGGGGTGTAATGTCACCCAAATTTATTAGCATTAAGAATGCTT
TGTCACAATCAACAGATGAAAATGCACCACTTAATTTAAAAGATGGTTATCGATCCACTG
CCATTGTAATATCAATCGGAGGAGCTCAGGAATCATTAAATTCCAAACCTGGACAATACA
AAATCGTTATTAAGAAACGGAAAGGCTTCATCAAAGCTGTTTTACAGACCGGTGCATCAC
TTGTGCCGGTATTCTCTTTTGGTGAAGTTGATGTCTATGACCAAGTTGAAGGACCATTTT
TAAGAAAATTCCAAGAATTTATGAAACGTTTAACGAGCGTTTCACCTGTGATTTTTATCG
GTCGTAGTTTTCTTCCAATTGGAGGAATCCCACGCCGAGCACCAATCAACACTGTCGTTG
GAGCACCGATAGAAGTAACAAAAAATCCTACACCATCACAGAGCGATATTGACAATTTAC
ATGCACGCTATATGGAAGATTTATTTAAGCTCTTCGAGGAACACAAATCGAAATATTTGA
ATGATTCTCGAAATGTACATTTGATTATGGAATAA

>g895.t13 Gene=g895 Length=288
MFVDRNADNDCSRGQGSDWIRNLKCFKYFANYFPVKLIKTAHLPPNKNYLFACYPHGVIG
CGYFANFVTHGTNFHQLFPGIRSRVVSLTYHFYIPFYRELVLAWGVMSPKFISIKNALSQ
STDENAPLNLKDGYRSTAIVISIGGAQESLNSKPGQYKIVIKKRKGFIKAVLQTGASLVP
VFSFGEVDVYDQVEGPFLRKFQEFMKRLTSVSPVIFIGRSFLPIGGIPRRAPINTVVGAP
IEVTKNPTPSQSDIDNLHARYMEDLFKLFEEHKSKYLNDSRNVHLIME

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g895.t13 CDD cd07987 LPLAT_MGAT-like 29 274 0
2 g895.t13 PANTHER PTHR12317 DIACYLGLYCEROL O-ACYLTRANSFERASE 13 282 0
3 g895.t13 PANTHER PTHR12317:SF0 DIACYLGLYCEROL O-ACYLTRANSFERASE 1 13 282 0
1 g895.t13 Pfam PF03982 Diacylglycerol acyltransferase 3 277 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed