General information for g895.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g895 is located on chr_3: 6754344..6755526 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g895 | g895.t2 | TTS | g895.t2 | 6753915 | 6753915 |
| chr_3 | g895 | g895.t2 | isoform | g895.t2 | 6753944 | 6754514 |
| chr_3 | g895 | g895.t2 | exon | g895.t2.exon1 | 6753944 | 6754251 |
| chr_3 | g895 | g895.t2 | cds | g895.t2.CDS1 | 6753944 | 6754198 |
| chr_3 | g895 | g895.t2 | exon | g895.t2.exon2 | 6754308 | 6754452 |
| chr_3 | g895 | g895.t2 | exon | g895.t2.exon3 | 6754509 | 6754514 |
| chr_3 | g895 | g895.t2 | TSS | g895.t2 | NA | NA |
Sequences
>g895.t2 Gene=g895 Length=459
ACTGCCATTGTAATATCAATCGGAGGAGCTCAGGAATCATTAAATTCCAAACCTGGACAA
TACAAAATCGTTATTAAGAAACGGAAAGGCTTCATCAAAGCTGTTTTACAGACCGGTGCA
TCACTTGTGCCGGTATTCTCTTTTGGTGAAGTTGATGTCTATGACCAAGTTGAAGGACCA
TTTTTAAGAAAATTCCAAGAATTTATGAAACGTTTAACGAGCGTTTCACCTGTGATTTTT
ATCGGTCGTAGTTTTCTTCCAATTGGAGGAATCCCACGCCGAGCACCAATCAACACTGTC
GTTGGAGCACCGATAGAAGTAACAAAAAATCCTACACCATCACAGAGCGATATTGACAAT
TTACATGCACGCTATATGGAAGATTTATTTAAGCTCTTCGAGGAACACAAATCGAAATAT
TTGAATGATTCTCGAAATGTACATTTGATTATGGAATAA
>g895.t2 Gene=g895 Length=84
MKRLTSVSPVIFIGRSFLPIGGIPRRAPINTVVGAPIEVTKNPTPSQSDIDNLHARYMED
LFKLFEEHKSKYLNDSRNVHLIME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g895.t2 | PANTHER | PTHR12317 | DIACYLGLYCEROL O-ACYLTRANSFERASE | 1 | 78 | 0 |
| 3 | g895.t2 | PANTHER | PTHR12317:SF0 | DIACYLGLYCEROL O-ACYLTRANSFERASE 1 | 1 | 78 | 0 |
| 1 | g895.t2 | Pfam | PF03982 | Diacylglycerol acyltransferase | 1 | 81 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed