General information for g895.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 2-acylglycerol O-acyltransferase 2-A.
Parent gene
- The parent gene g895 is located on chr_3: 6754344..6755526 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g895 | g895.t3 | TTS | g895.t3 | 6753915 | 6753915 |
| chr_3 | g895 | g895.t3 | isoform | g895.t3 | 6753944 | 6754809 |
| chr_3 | g895 | g895.t3 | exon | g895.t3.exon1 | 6753944 | 6754251 |
| chr_3 | g895 | g895.t3 | cds | g895.t3.CDS1 | 6753944 | 6754251 |
| chr_3 | g895 | g895.t3 | exon | g895.t3.exon2 | 6754308 | 6754452 |
| chr_3 | g895 | g895.t3 | cds | g895.t3.CDS2 | 6754308 | 6754452 |
| chr_3 | g895 | g895.t3 | exon | g895.t3.exon3 | 6754509 | 6754743 |
| chr_3 | g895 | g895.t3 | cds | g895.t3.CDS3 | 6754509 | 6754604 |
| chr_3 | g895 | g895.t3 | exon | g895.t3.exon4 | 6754798 | 6754809 |
| chr_3 | g895 | g895.t3 | TSS | g895.t3 | 6755612 | 6755612 |
Sequences
>g895.t3 Gene=g895 Length=700
TGGAGTTATTGGCTGTGGCTATTTTGCAAATTTCGTGACTCATGGAACAAACTTTCATCA
ACTATTTCCTGGAATTCGGTCACGTGTTGTGTCACTTACTTATCACTTTTACATTCCATT
TTATCGTGAATTAGTTTTAGCATGGGGTGTAATGTCACCCAAATTTATTAGCATTAAGAA
TGCTTTGTCACAATCAACAGATGAAAATGCACCACTTAATTTAAAAGATGGTTATCGATC
CACTGCCATTGTAATATCAATCGGAGGAGCTCAGGAATCATTAAATTCCAAACCTGGACA
ATACAAAATCGTTATTAAGAAACGGAAAGGCTTCATCAAAGCTGTTTTACAGACCGGTGC
ATCACTTGTGCCGGTATTCTCTTTTGGTGAAGTTGATGTCTATGACCAAGTTGAAGGACC
ATTTTTAAGAAAATTCCAAGAATTTATGAAACGTTTAACGAGCGTTTCACCTGTGATTTT
TATCGGTCGTAGTTTTCTTCCAATTGGAGGAATCCCACGCCGAGCACCAATCAACACTGT
CGTTGGAGCACCGATAGAAGTAACAAAAAATCCTACACCATCACAGAGCGATATTGACAA
TTTACATGCACGCTATATGGAAGATTTATTTAAGCTCTTCGAGGAACACAAATCGAAATA
TTTGAATGATTCTCGAAATGTACATTTGATTATGGAATAA
>g895.t3 Gene=g895 Length=182
MSPKFISIKNALSQSTDENAPLNLKDGYRSTAIVISIGGAQESLNSKPGQYKIVIKKRKG
FIKAVLQTGASLVPVFSFGEVDVYDQVEGPFLRKFQEFMKRLTSVSPVIFIGRSFLPIGG
IPRRAPINTVVGAPIEVTKNPTPSQSDIDNLHARYMEDLFKLFEEHKSKYLNDSRNVHLI
ME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g895.t3 | CDD | cd07987 | LPLAT_MGAT-like | 32 | 168 | 0 |
| 2 | g895.t3 | PANTHER | PTHR12317 | DIACYLGLYCEROL O-ACYLTRANSFERASE | 17 | 176 | 0 |
| 3 | g895.t3 | PANTHER | PTHR12317:SF0 | DIACYLGLYCEROL O-ACYLTRANSFERASE 1 | 17 | 176 | 0 |
| 1 | g895.t3 | Pfam | PF03982 | Diacylglycerol acyltransferase | 14 | 179 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed