General information for g896.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g896 is located on chr_3: 6763587..6764909 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g896 | g896.t1 | isoform | g896.t1 | 6763587 | 6764909 |
| chr_3 | g896 | g896.t1 | exon | g896.t1.exon1 | 6763587 | 6764909 |
| chr_3 | g896 | g896.t1 | cds | g896.t1.CDS1 | 6763587 | 6764909 |
| chr_3 | g896 | g896.t1 | TSS | g896.t1 | NA | NA |
| chr_3 | g896 | g896.t1 | TTS | g896.t1 | NA | NA |
Sequences
>g896.t1 Gene=g896 Length=1323
ATGCAAAAAGGATCGTGTGAATATTCAGATGTATCATTGTACTATTATGGACCAGTTTAC
ATCTGTATCGTCCAAAATCAGCCAGAAAATTTTGATATCTCTCAAGTTATCAAAAATACA
AATCATTTAGAAAACAGAAATTACTCTGATGTTACTGCAGTTTATTTTGAGAATTGCATT
TTACCAACAGTTCCTCAAGGACTGACAAAATTGTTTCCTAATCTAGTTTATCTCATCATC
GATAAATGTGATTTCGCTTATTTAAGACGTGAAAGTTTAACAGAATATCAAAACCTAAAA
ATGCTTGATATGAGCGGCATCAAAATTCCATTTCTTCAAGGTGATGTTTTTGATGATTTA
AAATCTTTGGAAACACTTGATCTTCACAACTGTAGCATTGCTTTAATTGAGCCAAAAGTT
TTTGACAACCTCAGCAATCTCAAACATATTGATCTCATGGAAAATTTGTGTATTAATAAA
TTCTTCAGTGCAATTGAAGGAGAAATCAGTGACGTTACTTTTGATGAATTGAAGCAAGAA
CTACTTGAAAATTACCGTTTGAAGTTTAATGAGAAAATTGAAAATAATTTAAAAGAAGAC
ATTGAATATTTAAGATTAAAATTGGCAAAAAAGGATAAAGAATATGAGGAACTTGATCAA
TTTGTTAATGACACAATTATGTCATCAGAAATTGATCTAAATAATGTTTATAAAAAATGT
GAGCTATTGATGGCTGAAAATGCTGAACTCAAAAGTAAATTAGGCTTCTTTGAAGATATT
GAGACTGTTATTAAAAGTGATGAACTTAAAGATTTTACCATCAAGACTGATTATGAAGAA
TTTAAAGCTCACAGATTTGTTCTTGCTGCTAGAAGTTCAGTTTTTGCTGACATGTTTAAG
GAAAATATTCATGCTGAATGTTTGAATTTGGTTGATGTCACAGCAAAAATTTTTCGCGTG
ATTTTAGACTTTATATACAAAAATAAAATTCCAGAAAATGAAGATGTTGATTTCTTCAAA
CTTTTGAAAGCATGTGAGCGTTTAAAAATAGAAAAATTGAAAACTTTCGCTGCTGAAAAA
TTGATAAATAAAGTCAACAATGAAAATGCTCTTGAAGTTCTAACATTGAGCATTAAATTT
GGTTTTGAAGAGTTACAAAAGAAATCATTTTTGATAATCAAAAAATTTCTTAGTTCTGAC
AAAATTGATGATAAATTAATGAATAATCCTGAAAAGCTCAAAAATTTGATGGAAATTGTT
AGGAAAAAGAATGAAATTATGAAAGCTATGGATGAAAAATTCAATTCAGTTTTGAATGAA
TGA
>g896.t1 Gene=g896 Length=440
MQKGSCEYSDVSLYYYGPVYICIVQNQPENFDISQVIKNTNHLENRNYSDVTAVYFENCI
LPTVPQGLTKLFPNLVYLIIDKCDFAYLRRESLTEYQNLKMLDMSGIKIPFLQGDVFDDL
KSLETLDLHNCSIALIEPKVFDNLSNLKHIDLMENLCINKFFSAIEGEISDVTFDELKQE
LLENYRLKFNEKIENNLKEDIEYLRLKLAKKDKEYEELDQFVNDTIMSSEIDLNNVYKKC
ELLMAENAELKSKLGFFEDIETVIKSDELKDFTIKTDYEEFKAHRFVLAARSSVFADMFK
ENIHAECLNLVDVTAKIFRVILDFIYKNKIPENEDVDFFKLLKACERLKIEKLKTFAAEK
LINKVNNENALEVLTLSIKFGFEELQKKSFLIIKKFLSSDKIDDKLMNNPEKLKNLMEIV
RKKNEIMKAMDEKFNSVLNE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g896.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 271 | 348 | 9.62126E-19 |
| 9 | g896.t1 | Coils | Coil | Coil | 233 | 253 | - |
| 7 | g896.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 19 | 223 | 1.0E-19 |
| 8 | g896.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 245 | 396 | 7.1E-30 |
| 3 | g896.t1 | PANTHER | PTHR26379:SF309 | OS02G0311150 PROTEIN | 224 | 400 | 7.6E-19 |
| 4 | g896.t1 | PANTHER | PTHR26379 | BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 | 224 | 400 | 7.6E-19 |
| 1 | g896.t1 | Pfam | PF13855 | Leucine rich repeat | 73 | 133 | 2.7E-7 |
| 2 | g896.t1 | Pfam | PF00651 | BTB/POZ domain | 265 | 363 | 1.7E-18 |
| 12 | g896.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 270 | 334 | 17.045 |
| 11 | g896.t1 | SMART | SM00225 | BTB_4 | 270 | 365 | 3.3E-19 |
| 5 | g896.t1 | SUPERFAMILY | SSF52058 | L domain-like | 48 | 155 | 3.78E-18 |
| 6 | g896.t1 | SUPERFAMILY | SSF54695 | POZ domain | 257 | 364 | 1.28E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed