Gene loci information

Transcript annotation

  • This transcript has been annotated as Arginine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8960 g8960.t16 isoform g8960.t16 34206316 34213874
chr_2 g8960 g8960.t16 exon g8960.t16.exon1 34206316 34206402
chr_2 g8960 g8960.t16 TSS g8960.t16 34206336 34206336
chr_2 g8960 g8960.t16 exon g8960.t16.exon2 34213006 34213280
chr_2 g8960 g8960.t16 cds g8960.t16.CDS1 34213019 34213280
chr_2 g8960 g8960.t16 exon g8960.t16.exon3 34213348 34213874
chr_2 g8960 g8960.t16 cds g8960.t16.CDS2 34213348 34213874
chr_2 g8960 g8960.t16 TTS g8960.t16 34214625 34214625

Sequences

>g8960.t16 Gene=g8960 Length=889
GCACAGTTCTCGAGCGATTCTGTTTCAAAAACAGTTTGTGAAAAGTCACATTCAGTTGAA
TCTTCTTCAGTGCAAATTCACTCAAAGTAACAAATCCGAAATGGTTGACGCTGCAGTACT
TGAGAAATTGGAATCAGGCTTTGCCAAGCTCCAAGCCTCTGACTCGAAATCATTGCTTAA
AAAGTATTTGACCAAGGAAGTCTTTGATAATCTTAAGAACAAGAAGACCCCAACATTTGG
TTCAACTTTGCTTGATGTCATCCAATCTGGTTTAGAAAACCACGACTCTGGCGTCGGAAT
TTACGCACCAGATGCCGAGGCTTACACAACTTTCGCTGAATTGTTTGACCCAATCATTGA
AGGATTCAAGAAGACCGACAAGCATCCAGCAAAGGACTTTGGTGATGTAAATGCATTTGG
AGATTTGGATCCAACTGGTGAATTCGTTGTCTCAACTCGTGTCCGTTGCGGTCGCTCAAT
GGAAGGATATCCATTCAATCCATGCTTGACTGAAGCACAATACAAAGAAATGGAACAAAA
GGTTTCAACCACATTGTCAGGCTTGGAAGGTGAATTGAAGGGCAAATTCTACCCATTGAC
TGGCATGGACAAAGCTACTCAACAACAACTCATCGATGACCATTTCTTGTTCAAAGAAGG
TGATCGCTTCTTGCAAGCTGCCAATGCTTGCCGCTATTGGCCATCAGGTCGCGGTATCTA
CCACAATGATGCCAAGACTTTCCTTGTCTGGTGCAATGAAGAAGATCACTTGCGTATCAT
TTCAATGCAAATGGGTGGCAATCTTGGTGAAGTTTTCCGTCGTTTGACAACTGCCGTTAA
TGACATTGAGAAGCGTATTCCATTCAGCCACAACGACCGCTTGGGATTC

>g8960.t16 Gene=g8960 Length=263
MVDAAVLEKLESGFAKLQASDSKSLLKKYLTKEVFDNLKNKKTPTFGSTLLDVIQSGLEN
HDSGVGIYAPDAEAYTTFAELFDPIIEGFKKTDKHPAKDFGDVNAFGDLDPTGEFVVSTR
VRCGRSMEGYPFNPCLTEAQYKEMEQKVSTTLSGLEGELKGKFYPLTGMDKATQQQLIDD
HFLFKEGDRFLQAANACRYWPSGRGIYHNDAKTFLVWCNEEDHLRIISMQMGGNLGEVFR
RLTTAVNDIEKRIPFSHNDRLGF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8960.t16 Gene3D G3DSA:1.10.135.10 Transferase Creatine Kinase 1 94 0.000
7 g8960.t16 Gene3D G3DSA:3.30.590.10 Glutamine synthetase/guanido kinase 95 263 0.000
3 g8960.t16 PANTHER PTHR11547:SF38 ARGININE KINASE-RELATED 8 263 0.000
4 g8960.t16 PANTHER PTHR11547 ARGININE OR CREATINE KINASE 8 263 0.000
1 g8960.t16 Pfam PF02807 ATP:guanido phosphotransferase, N-terminal domain 20 87 0.000
2 g8960.t16 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 143 263 0.000
10 g8960.t16 ProSiteProfiles PS51509 Phosphagen kinase N-terminal domain profile. 6 91 23.478
9 g8960.t16 ProSiteProfiles PS51510 Phosphagen kinase C-terminal domain profile. 115 263 53.744
5 g8960.t16 SUPERFAMILY SSF48034 Guanido kinase N-terminal domain 3 93 0.000
6 g8960.t16 SUPERFAMILY SSF55931 Glutamine synthetase/guanido kinase 93 263 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046314 phosphocreatine biosynthetic process BP
GO:0016301 kinase activity MF
GO:0004111 creatine kinase activity MF
GO:0003824 catalytic activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed