General information for g8960.t33
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Arginine kinase.
Parent gene
- The parent gene g8960 is located on chr_2: 34214230..34214913 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8960 | g8960.t33 | TSS | g8960.t33 | 34213005 | 34213005 |
| chr_2 | g8960 | g8960.t33 | isoform | g8960.t33 | 34213184 | 34213707 |
| chr_2 | g8960 | g8960.t33 | exon | g8960.t33.exon1 | 34213184 | 34213280 |
| chr_2 | g8960 | g8960.t33 | exon | g8960.t33.exon2 | 34213336 | 34213707 |
| chr_2 | g8960 | g8960.t33 | cds | g8960.t33.CDS1 | 34213464 | 34213706 |
| chr_2 | g8960 | g8960.t33 | TTS | g8960.t33 | 34214625 | 34214625 |
Sequences
>g8960.t33 Gene=g8960 Length=469
TCTGGTTTAGAAAACCACGACTCTGGCGTCGGAATTTACGCACCAGATGCCGAGGCTTAC
ACAACTTTCGCTGAATTGTTTGACCCAATCATTGAAGACTACCATGGTGGATTCAAGAAG
ACCGACAAGCATCCAGCAAAGGACTTTGGTGATGTAAATGCATTTGGAGATTTGGATCCA
ACTGGTGAATTCGTTGTCTCAACTCGTGTCCGTTGCGGTCGCTCAATGGAAGGATATCCA
TTCAATCCATGCTTGACTGAAGCACAATACAAAGAAATGGAACAAAAGGTTTCAACCACA
TTGTCAGGCTTGGAAGGTGAATTGAAGGGCAAATTCTACCCATTGACTGGCATGGACAAA
GCTACTCAACAACAACTCATCGATGACCATTTCTTGTTCAAAGAAGGTGATCGCTTCTTG
CAAGCTGCCAATGCTTGCCGCTATTGGCCATCAGGTCGCGGTATCTACC
>g8960.t33 Gene=g8960 Length=81
MEGYPFNPCLTEAQYKEMEQKVSTTLSGLEGELKGKFYPLTGMDKATQQQLIDDHFLFKE
GDRFLQAANACRYWPSGRGIY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8960.t33 | Gene3D | G3DSA:3.30.590.10 | Glutamine synthetase/guanido kinase | 1 | 81 | 0.000 |
| 2 | g8960.t33 | PANTHER | PTHR11547 | ARGININE OR CREATINE KINASE | 2 | 81 | 0.000 |
| 3 | g8960.t33 | PANTHER | PTHR11547:SF20 | ARGININE KINASE | 2 | 81 | 0.000 |
| 1 | g8960.t33 | Pfam | PF00217 | ATP:guanido phosphotransferase, C-terminal catalytic domain | 17 | 81 | 0.000 |
| 6 | g8960.t33 | ProSiteProfiles | PS51510 | Phosphagen kinase C-terminal domain profile. | 1 | 81 | 25.833 |
| 4 | g8960.t33 | SUPERFAMILY | SSF55931 | Glutamine synthetase/guanido kinase | 2 | 81 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046314 | phosphocreatine biosynthetic process | BP |
| GO:0016301 | kinase activity | MF |
| GO:0004111 | creatine kinase activity | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
