Gene loci information

Transcript annotation

  • This transcript has been annotated as Arginine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8960 g8960.t35 TSS g8960.t35 34213005 34213005
chr_2 g8960 g8960.t35 isoform g8960.t35 34213334 34214613
chr_2 g8960 g8960.t35 exon g8960.t35.exon1 34213334 34213878
chr_2 g8960 g8960.t35 cds g8960.t35.CDS1 34213464 34213878
chr_2 g8960 g8960.t35 exon g8960.t35.exon2 34213954 34214157
chr_2 g8960 g8960.t35 cds g8960.t35.CDS2 34213954 34213991
chr_2 g8960 g8960.t35 exon g8960.t35.exon3 34214230 34214613
chr_2 g8960 g8960.t35 TTS g8960.t35 34214625 34214625

Sequences

>g8960.t35 Gene=g8960 Length=1133
AGACTACCATGGTGGATTCAAGAAGACCGACAAGCATCCAGCAAAGGACTTTGGTGATGT
AAATGCATTTGGAGATTTGGATCCAACTGGTGAATTCGTTGTCTCAACTCGTGTCCGTTG
CGGTCGCTCAATGGAAGGATATCCATTCAATCCATGCTTGACTGAAGCACAATACAAAGA
AATGGAACAAAAGGTTTCAACCACATTGTCAGGCTTGGAAGGTGAATTGAAGGGCAAATT
CTACCCATTGACTGGCATGGACAAAGCTACTCAACAACAACTCATCGATGACCATTTCTT
GTTCAAAGAAGGTGATCGCTTCTTGCAAGCTGCCAATGCTTGCCGCTATTGGCCATCAGG
TCGCGGTATCTACCACAATGATGCCAAGACTTTCCTTGTCTGGTGCAATGAAGAAGATCA
CTTGCGTATCATTTCAATGCAAATGGGTGGCAATCTTGGTGAAGTTTTCCGTCGTTTGAC
AACTGCCGTTAATGACATTGAGAAGCGTATTCCATTCAGCCACAACGACCGCTTGGGATT
CGTAAAACTTGGGAACAACCATCCGTGCATCAGTTCACATTAAGGTTCCAAAATTGGCTG
CCAACAAAGCTCGTCTTGAGGAAGTTGCTTCCAAATACAATTTGCAAGTTCGTGGCACAC
GCGGAGAACATACAGAGGCTGAAGGTGGCATTTATGATATTTCAAACAAGAGACGTATGG
GCTTGACTGAATTCCAAGCTGTCAAGGAGATGTACGATGGAATTACTGAAATCATCAAGA
TTGAAAAGTCATTGTAAAGTGTGTAAAAGCAAAAACAAAACAACCCAACTTAAAATTGTC
ATCTATTTTCAAAATTATACATTAATATAAAAAACACATATACACACATGAATTAACAAC
AAAACTCAATCGTCATTTGCAATGGCGATCAAAGATTTGGAAATCTTTCATCAGTGATCT
TTATTCTTGTTTAATTTAATTGATAAAAAAATGTGTCCTATTCTCTCCATCTCAGTATAA
GTTTGATGTGATTGATCACAAGCATTAAGAATATTTTGGAATAAAATGTGAATTTAACAT
CTATTACCACATACAGCACATGCAAACAAGAAGTTAATTAAATAAAAACCGTA

>g8960.t35 Gene=g8960 Length=150
MEGYPFNPCLTEAQYKEMEQKVSTTLSGLEGELKGKFYPLTGMDKATQQQLIDDHFLFKE
GDRFLQAANACRYWPSGRGIYHNDAKTFLVWCNEEDHLRIISMQMGGNLGEVFRRLTTAV
NDIEKRIPFSHNDRLGFVKLGNNHPCISSH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g8960.t35 Gene3D G3DSA:3.30.590.10 Glutamine synthetase/guanido kinase 1 142 0.000
2 g8960.t35 PANTHER PTHR11547:SF38 ARGININE KINASE-RELATED 2 139 0.000
3 g8960.t35 PANTHER PTHR11547 ARGININE OR CREATINE KINASE 2 139 0.000
1 g8960.t35 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 17 138 0.000
6 g8960.t35 ProSiteProfiles PS51510 Phosphagen kinase C-terminal domain profile. 1 137 41.504
4 g8960.t35 SUPERFAMILY SSF55931 Glutamine synthetase/guanido kinase 2 138 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046314 phosphocreatine biosynthetic process BP
GO:0016301 kinase activity MF
GO:0004111 creatine kinase activity MF
GO:0003824 catalytic activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values