Gene loci information

Transcript annotation

  • This transcript has been annotated as Arginine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8960 g8960.t8 TSS g8960.t8 34204388 34204388
chr_2 g8960 g8960.t8 isoform g8960.t8 34204416 34214613
chr_2 g8960 g8960.t8 exon g8960.t8.exon1 34204416 34204666
chr_2 g8960 g8960.t8 exon g8960.t8.exon2 34213006 34213280
chr_2 g8960 g8960.t8 cds g8960.t8.CDS1 34213019 34213280
chr_2 g8960 g8960.t8 exon g8960.t8.exon3 34213336 34213644
chr_2 g8960 g8960.t8 cds g8960.t8.CDS2 34213336 34213644
chr_2 g8960 g8960.t8 exon g8960.t8.exon4 34213750 34213874
chr_2 g8960 g8960.t8 cds g8960.t8.CDS3 34213750 34213874
chr_2 g8960 g8960.t8 exon g8960.t8.exon5 34213936 34214157
chr_2 g8960 g8960.t8 cds g8960.t8.CDS4 34213936 34214157
chr_2 g8960 g8960.t8 exon g8960.t8.exon6 34214230 34214613
chr_2 g8960 g8960.t8 cds g8960.t8.CDS5 34214230 34214277
chr_2 g8960 g8960.t8 TTS g8960.t8 34214625 34214625

Sequences

>g8960.t8 Gene=g8960 Length=1566
AAAGTACGTAAAATTATTTTTCCATTAAAAGTTAAAGCAATTTAGCATTAATTTTCGACT
GATAAGTTTCATATTGCACAGTTATTTCATTATAAGTCATATATACATCAATTCATTATT
AAAACTTGTTGAATTTTGGACTTTAACACGCTTGCAAAAAAGTTGAAAGATAATTTTTGG
GAAAAAATCGATTGATATTTTATTGGCACATAAACACGAAATTCGCAAATATTCTGAATC
ATTGTCGTCAATAACAAATCCGAAATGGTTGACGCTGCAGTACTTGAGAAATTGGAATCA
GGCTTTGCCAAGCTCCAAGCCTCTGACTCGAAATCATTGCTTAAAAAGTATTTGACCAAG
GAAGTCTTTGATAATCTTAAGAACAAGAAGACCCCAACATTTGGTTCAACTTTGCTTGAT
GTCATCCAATCTGGTTTAGAAAACCACGACTCTGGCGTCGGAATTTACGCACCAGATGCC
GAGGCTTACACAACTTTCGCTGAATTGTTTGACCCAATCATTGAAGACTACCATGGTGGA
TTCAAGAAGACCGACAAGCATCCAGCAAAGGACTTTGGTGATGTAAATGCATTTGGAGAT
TTGGATCCAACTGGTGAATTCGTTGTCTCAACTCGTGTCCGTTGCGGTCGCTCAATGGAA
GGATATCCATTCAATCCATGCTTGACTGAAGCACAATACAAAGAAATGGAACAAAAGGTT
TCAACCACATTGTCAGGCTTGGAAGGTGAATTGAAGGGCAAATTCTACCCATTGACTGGC
ATGGACAAAGCTACTCAACAACAACTCATCGATGACCATTTCTTGTTCAAAGAAGATCAC
TTGCGTATCATTTCAATGCAAATGGGTGGCAATCTTGGTGAAGTTTTCCGTCGTTTGACA
ACTGCCGTTAATGACATTGAGAAGCGTATTCCATTCAGCCACAACGACCGCTTGGGATTC
CTCACATTCTGCCCAACCAACTTGGGAACAACCATCCGTGCATCAGTTCACATTAAGGTT
CCAAAATTGGCTGCCAACAAAGCTCGTCTTGAGGAAGTTGCTTCCAAATACAATTTGCAA
GTTCGTGGCACACGCGGAGAACATACAGAGGCTGAAGGTGGCATTTATGATATTTCAAAC
AAGAGACGTATGGGCTTGACTGAATTCCAAGCTGTCAAGGAGATGTACGATGGAATTACT
GAAATCATCAAGATTGAAAAGTCATTGTAAAGTGTGTAAAAGCAAAAACAAAACAACCCA
ACTTAAAATTGTCATCTATTTTCAAAATTATACATTAATATAAAAAACACATATACACAC
ATGAATTAACAACAAAACTCAATCGTCATTTGCAATGGCGATCAAAGATTTGGAAATCTT
TCATCAGTGATCTTTATTCTTGTTTAATTTAATTGATAAAAAAATGTGTCCTATTCTCTC
CATCTCAGTATAAGTTTGATGTGATTGATCACAAGCATTAAGAATATTTTGGAATAAAAT
GTGAATTTAACATCTATTACCACATACAGCACATGCAAACAAGAAGTTAATTAAATAAAA
ACCGTA

>g8960.t8 Gene=g8960 Length=321
MVDAAVLEKLESGFAKLQASDSKSLLKKYLTKEVFDNLKNKKTPTFGSTLLDVIQSGLEN
HDSGVGIYAPDAEAYTTFAELFDPIIEDYHGGFKKTDKHPAKDFGDVNAFGDLDPTGEFV
VSTRVRCGRSMEGYPFNPCLTEAQYKEMEQKVSTTLSGLEGELKGKFYPLTGMDKATQQQ
LIDDHFLFKEDHLRIISMQMGGNLGEVFRRLTTAVNDIEKRIPFSHNDRLGFLTFCPTNL
GTTIRASVHIKVPKLAANKARLEEVASKYNLQVRGTRGEHTEAEGGIYDISNKRRMGLTE
FQAVKEMYDGITEIIKIEKSL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g8960.t8 CDD cd07932 arginine_kinase_like 9 321 0.0
12 g8960.t8 Gene3D G3DSA:1.10.135.10 Transferase Creatine Kinase 1 95 2.2E-38
11 g8960.t8 Gene3D G3DSA:3.30.590.10 Glutamine synthetase/guanido kinase 98 190 2.6E-35
10 g8960.t8 Gene3D G3DSA:3.30.590.10 Glutamine synthetase/guanido kinase 191 321 3.4E-57
4 g8960.t8 PANTHER PTHR11547:SF38 ARGININE KINASE-RELATED 8 190 1.6E-126
6 g8960.t8 PANTHER PTHR11547 ARGININE OR CREATINE KINASE 8 190 1.6E-126
3 g8960.t8 PANTHER PTHR11547:SF38 ARGININE KINASE-RELATED 189 320 1.6E-126
5 g8960.t8 PANTHER PTHR11547 ARGININE OR CREATINE KINASE 189 320 1.6E-126
1 g8960.t8 Pfam PF02807 ATP:guanido phosphotransferase, N-terminal domain 20 87 6.0E-30
2 g8960.t8 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 190 320 8.3E-56
9 g8960.t8 ProSitePatterns PS00112 Phosphagen kinase active site signature. 236 242 -
14 g8960.t8 ProSiteProfiles PS51509 Phosphagen kinase N-terminal domain profile. 6 91 26.463
13 g8960.t8 ProSiteProfiles PS51510 Phosphagen kinase C-terminal domain profile. 119 321 57.658
7 g8960.t8 SUPERFAMILY SSF48034 Guanido kinase N-terminal domain 18 100 2.49E-33
8 g8960.t8 SUPERFAMILY SSF55931 Glutamine synthetase/guanido kinase 97 320 2.5E-84

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046314 phosphocreatine biosynthetic process BP
GO:0016301 kinase activity MF
GO:0004111 creatine kinase activity MF
GO:0003824 catalytic activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values