Gene loci information

Transcript annotation

  • This transcript has been annotated as Guanylate kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8969 g8969.t4 TSS g8969.t4 34261822 34261822
chr_2 g8969 g8969.t4 isoform g8969.t4 34261963 34262959
chr_2 g8969 g8969.t4 exon g8969.t4.exon1 34261963 34262235
chr_2 g8969 g8969.t4 cds g8969.t4.CDS1 34262184 34262235
chr_2 g8969 g8969.t4 exon g8969.t4.exon2 34262290 34262494
chr_2 g8969 g8969.t4 cds g8969.t4.CDS2 34262290 34262494
chr_2 g8969 g8969.t4 exon g8969.t4.exon3 34262560 34262959
chr_2 g8969 g8969.t4 cds g8969.t4.CDS3 34262560 34262959
chr_2 g8969 g8969.t4 TTS g8969.t4 34263172 34263172

Sequences

>g8969.t4 Gene=g8969 Length=878
ATGCTATCGGTCACTGTTTTAATTGCACGAGGTAATTATCTCACATTTTTCTCTTTTGTA
TTTATTGAAAAGAAAATTTTCTCATTTTCATTTAAAAATTGTGTGAAGGAGCAGGTTATT
AGACTAATTGGCATTTTCTTATAATCACTACGCCATTTAGAAACTAGTTTTAATTAATTC
TATATCATATCATTATAGCTCTTTCAACGCTCAACAATAAAATGAAGCCTGCCTCTATTC
GGCCTCTTGTAATTTGTGGACCAAGTGGTTCTGGGAAATCAACGCTTCTCAAGAGACTTT
TTAAAGAATTTCCAAAAACATTTGGCTTTAGTGTGTCGCACACGACAAGAAAACCAAGAA
GTGACGAAGAAGATGGTGTTCATTATTATTTCGTAAATGCTGATGACATGAAAGAAGCCA
TAAAAGCTGGTGAATTTATTGAAACGGCAGTTTTTAGCGGCAATATTTATGGAACAAGCA
AAAAAGCAATAGAGAGAGTTCAGCAAGACGGAAAAGTTTGTGTTCTTGACATTGAAATTG
AAGGAGTGAAACAAGTAAAAAATTCACATCTTAACGCCATTTTTGTGTTCATTCAGCCAC
CATCAATTGAAGAACTTGAAAGACGATTGAGAGCACGAAAGACAGAAACAGAAGAAAGTC
TTCAAAAAAGACTTAATACAGCCAAACAAGAACTTGCATTTGGTTTGCAACCAGGCAATT
TTGATATCATCATAAAAAATCATAATCTTAAACAAGCATATCACGAACTACGTGACTTTG
TCTATGCACATCTCATCAATCAAAAAGAACAAGGACTAAATGTTTGTGTCGAAAGTATGT
CACTTGATGACAGCGATTTTATGACTAATCTTGACTAA

>g8969.t4 Gene=g8969 Length=218
MKPASIRPLVICGPSGSGKSTLLKRLFKEFPKTFGFSVSHTTRKPRSDEEDGVHYYFVNA
DDMKEAIKAGEFIETAVFSGNIYGTSKKAIERVQQDGKVCVLDIEIEGVKQVKNSHLNAI
FVFIQPPSIEELERRLRARKTETEESLQKRLNTAKQELAFGLQPGNFDIIIKNHNLKQAY
HELRDFVYAHLINQKEQGLNVCVESMSLDDSDFMTNLD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g8969.t4 CDD cd00071 GMPK 8 184 1.08305E-69
6 g8969.t4 Coils Coil Coil 129 157 -
4 g8969.t4 Gene3D G3DSA:3.40.50.300 - 10 183 5.2E-72
5 g8969.t4 Gene3D G3DSA:3.30.63.10 Guanylate Kinase phosphate binding domain 38 97 5.2E-72
2 g8969.t4 PANTHER PTHR23117 GUANYLATE KINASE-RELATED 2 194 4.7E-90
1 g8969.t4 Pfam PF00625 Guanylate kinase 6 188 6.9E-64
8 g8969.t4 ProSitePatterns PS00856 Guanylate kinase-like signature. 41 58 -
11 g8969.t4 ProSiteProfiles PS50052 Guanylate kinase-like domain profile. 6 188 43.452
9 g8969.t4 SMART SM00072 gk_7 5 191 5.9E-80
3 g8969.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 4 190 9.73E-65
10 g8969.t4 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 8 187 4.0E-63

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006163 purine nucleotide metabolic process BP
GO:0004385 guanylate kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed