General information for g8971.t65
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Acetyl-CoA carboxylase.
Parent gene
- The parent gene g8971 is located on chr_2: 34268266..34272771 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8971 | g8971.t65 | TTS | g8971.t65 | 34265011 | 34265011 |
| chr_2 | g8971 | g8971.t65 | isoform | g8971.t65 | 34265964 | 34267520 |
| chr_2 | g8971 | g8971.t65 | exon | g8971.t65.exon1 | 34265964 | 34266745 |
| chr_2 | g8971 | g8971.t65 | cds | g8971.t65.CDS1 | 34265964 | 34266745 |
| chr_2 | g8971 | g8971.t65 | exon | g8971.t65.exon2 | 34266813 | 34267520 |
| chr_2 | g8971 | g8971.t65 | cds | g8971.t65.CDS2 | 34266813 | 34267494 |
| chr_2 | g8971 | g8971.t65 | TSS | g8971.t65 | NA | NA |
Sequences
>g8971.t65 Gene=g8971 Length=1490
GATTACCTGGTGAAAATGACATTGGCATGGTTGCATGGCGAATTCGATTAGCTACACCAG
AATTTCCAGATGGTCGTGACATTATTGTTATTGCTAATGATTTGACATCATATATCGGTT
CATTTGGACCACAAGAAGATATGGTCTTTCAAAAGGCATCAGAGATTGCACGTGAGAGAA
AAATTCCAAGAATTTACATTTCATGCAATAGTGGAGCTCGTATTGGTTTAGCTGAAGAAG
TGAAATCAATGTTTAAAATTGCATGGGAAGATCCAGAAGAACCAGAAAAGGGTTTCAAAT
ATCTTTATTTGACAACTGAAGATTATAGTAAAATTGCAAATCAAAATTCAGTTCGTGCAA
TTCTTATTGAAGATGAAGGTGAACCACGTTATAAAATTACTGACATTATTGGACAAAAAG
ATGGTATTGGTGTGGAAAATTTACGTTATGCTGGTATGATTGCAAGTGAAACATCAAAAG
CATATGATGATATTGTGACAATCTCTATGGTTACTTGTCGTACAATTGGTATTGGATCTT
ATTTAGTTCGTCTTGGACAACGTGTTATTCAAATTGAAAATTCTCACATTATTTTAACCG
GTTATGCTGCCTTAAATAAGCTTCTTGGACGAAAAGTCTATGCTTCAAATAATCAACTTG
GTGGAACACAAATTATGCATAATAATGGTGTCTCACATAAAACTGATGCTTGCGATTTGG
ATGGCATTTATACAATTTTGCATTGGCTTTCTTATATTCCTGATTGTCGTGGTGGAAAGT
TGCCAATGGTAATTCCAAACGATCCAATTAATCGCAATATTGGCTACATTCCAACAAAAG
CACCATACGATCCAAGATGGATGCTTGCTGGTCGTGTAAATCCAGTGAATCACAACGAAT
GGGAGACTGGTTTCTTCGATCGAAGTAGTTTTTCAGAAATTATGGAGCCTTGGGCTCAAA
CAGTCGTCACTGGTCGTGCACGATTGGGAGGAATTCCAGTTGGTGTAATTGCAGTAGAAA
CAAGAACAGTTGAAGTCACAATACCTGCTGATCCTGCAAACTTAGATTCCGAGTCAAAGA
CAGTTCAACAGGCAGGTCAAGTTTGGTATCCAGATTCATCATATAAAACAGCACAAGCAA
TTAAGGACTTTGATCGTGAGGAACTCCCTCTTTTCATCTTTGCAAATTGGCGTGGTTTCT
CAGGTGGACAAAAAGATATGTATGAACAAATTGTCAAATTTGGTGCATATATTGTTGATG
GTTTAAGAGAATACAAACAACCAGTGATTATTTATTTGCCACCAAATGCTGAATTGCGAG
GAGGTGCCTGGGCTGTACTCGATTCTTTGATAAATCCAAGATATATCGAGACATATTCAG
ATCCTGAAGCTCGTGCTGGCGTTTTAGAACCTGAAGGTATTGTTGAAGTCAAATATAAAG
AAAAAGATATGTTAAAGACCATACAACGACTTGATACAACAATTATTAAT
>g8971.t65 Gene=g8971 Length=488
MVAWRIRLATPEFPDGRDIIVIANDLTSYIGSFGPQEDMVFQKASEIARERKIPRIYISC
NSGARIGLAEEVKSMFKIAWEDPEEPEKGFKYLYLTTEDYSKIANQNSVRAILIEDEGEP
RYKITDIIGQKDGIGVENLRYAGMIASETSKAYDDIVTISMVTCRTIGIGSYLVRLGQRV
IQIENSHIILTGYAALNKLLGRKVYASNNQLGGTQIMHNNGVSHKTDACDLDGIYTILHW
LSYIPDCRGGKLPMVIPNDPINRNIGYIPTKAPYDPRWMLAGRVNPVNHNEWETGFFDRS
SFSEIMEPWAQTVVTGRARLGGIPVGVIAVETRTVEVTIPADPANLDSESKTVQQAGQVW
YPDSSYKTAQAIKDFDREELPLFIFANWRGFSGGQKDMYEQIVKFGAYIVDGLREYKQPV
IIYLPPNAELRGGAWAVLDSLINPRYIETYSDPEARAGVLEPEGIVEVKYKEKDMLKTIQ
RLDTTIIN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g8971.t65 | Gene3D | G3DSA:3.90.226.10 | - | 1 | 109 | 0.000 |
| 6 | g8971.t65 | Gene3D | G3DSA:3.90.226.10 | - | 110 | 247 | 0.000 |
| 8 | g8971.t65 | Gene3D | G3DSA:3.90.226.10 | - | 250 | 488 | 0.000 |
| 2 | g8971.t65 | PANTHER | PTHR45728 | ACETYL-COA CARBOXYLASE, ISOFORM A | 1 | 487 | 0.000 |
| 3 | g8971.t65 | PANTHER | PTHR45728:SF3 | ACETYL-COA CARBOXYLASE, ISOFORM A | 1 | 487 | 0.000 |
| 1 | g8971.t65 | Pfam | PF01039 | Carboxyl transferase domain | 11 | 482 | 0.000 |
| 10 | g8971.t65 | ProSiteProfiles | PS50980 | Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. | 1 | 256 | 46.427 |
| 9 | g8971.t65 | ProSiteProfiles | PS50989 | Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile. | 260 | 488 | 46.963 |
| 4 | g8971.t65 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 1 | 246 | 0.000 |
| 5 | g8971.t65 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 252 | 485 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016874 | ligase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
