General information for g8977.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Elongation of very long chain fatty acids protein 6.
Parent gene
- The parent gene g8977 is located on chr_2: 34313235..34315040 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8977 | g8977.t11 | isoform | g8977.t11 | 34308971 | 34315040 |
| chr_2 | g8977 | g8977.t11 | exon | g8977.t11.exon1 | 34308971 | 34310886 |
| chr_2 | g8977 | g8977.t11 | cds | g8977.t11.CDS1 | 34310745 | 34310886 |
| chr_2 | g8977 | g8977.t11 | exon | g8977.t11.exon2 | 34313832 | 34313894 |
| chr_2 | g8977 | g8977.t11 | cds | g8977.t11.CDS2 | 34313832 | 34313894 |
| chr_2 | g8977 | g8977.t11 | exon | g8977.t11.exon3 | 34313967 | 34314223 |
| chr_2 | g8977 | g8977.t11 | cds | g8977.t11.CDS3 | 34313967 | 34314115 |
| chr_2 | g8977 | g8977.t11 | exon | g8977.t11.exon4 | 34314983 | 34315040 |
| chr_2 | g8977 | g8977.t11 | TSS | g8977.t11 | 34315042 | 34315042 |
| chr_2 | g8977 | g8977.t11 | TTS | g8977.t11 | NA | NA |
Sequences
>g8977.t11 Gene=g8977 Length=2294
TGTAGCCGTCGGTTTAAGTCACAACAAGTTGTAACATTCTTCAATAAAGTTGAGAAAACA
AGATAACCAAAAGGAAGTTACAGTTTGTTGTTACTGAAGAATAAATTATTATCTAGTGGT
GTGTGCTTTAAAAAGGAGACGGAAAAAATATAGTTAATCAATCAAAATGCAAGTCGATTT
AGAATCAATCGGTAAATGGAATTATGACATCAGTGAAGTCAAACCAAATTATTCCTACAT
GTTTGACTTTGAGGCTCATTTCACTCATCAAAAAACTCGCCTTTGGATGCAAGAAAATTG
GACATATGTGTTTTGGTACTCGGGAATTTACATGATCGTAATATTTGCTGGACAACAGTT
TATGGCAAATAGACCGAGATTTGAACTAAGAGGACTTTTAGTATTGTGGAATTCAATGTT
AGCATTATTCAGTATAATTGGTTTTACTCGTACAGCACCCGAATTAATTCACGTTTTAAA
GAACTTCGGACTATTTCATTCTGTTTGTGTTCCTAGGTAAGTATTTTTGTAATAAATTCA
TAAACATCTGTTGATAGTACTTAAGCGAGCAAAAATATACTCATTTGGTAAAGGATTTAA
GTTGTCGTATATTTCTCTCACTGAATCGACTGATTTTCACTGAACTTTACACTCAAGTCA
TTCGTGTGATTACATTTGCGATAACGACTATTTTGGTGGTAACATTAGCATTGCGGAACT
TTGTCTTGATCTTTCAGCAAAAAAATGAAAAAAATTTTTCATGAATGAGTTTCTACTTAT
ATTTTTATTATGATGAGACATGTAATTAAATTACACAATTCATATAAATTGCTTATCCAT
TTGATAGCATTTTAAAACGATTAAGTTATATTATCTCAAATACACCTTTGAAATTAAGAA
AATAATCTCTGATAAGAGAGAATTGGTGATACTATGGCGCTCTCATACTTGTCTACTCAT
ACTGATAAGACAATTTCATTATTAATTATCATTCACTCACGCTAAAAAATAAAATCTCTT
GAGATACTAAAGGTAGTTTAATGATATTCAAAAATTCTTAAATACGAAAAGAACGAATGA
CGCAAATAAGAATAAAAATATTATGACTTTTGTGTGTTTAGTGATATTGCTGAATCATGG
TTCTCTTTAGAAATATTTTTGTTGACACAAATGCAGTATTCGCATCATTTCATTGACGTT
TAATTAAGAGCTCTCTATATACATATTAATTACTTTTCAACTTAAATATTTGTTTACCTC
AATTTCAATTAACAATCGTGTTGTTAATTATTGACAATTGTAATTTCAATGATTATTAAT
TAACAAGATCGAGACAACACAAGGCGATGTACTTTCTCATATTTTTTCTGACGTCACTAA
ATAACGCAAATTCATTGACCGAAGTAGGAATAAAAAGAAACTAAGTAATGAATAATAAAA
AATATATAAATTAGCATAAATAATTAACAAGGAGTAATAATTGCTATTGTAAAAAGTTAT
GTCATCGCACTTGTTGCTCTCCTTTTGTAATTCACTAAAAACTAAAATTGCGTGAGCTCA
TTCTAGATTGAGAAAAAATGGAACAAAAATAAACAACAGTATGATTTCATCATCCGAATT
CAAGTGCAATGTCAAATAAACCGATTTGAGCTTGAAGGCACGTTTTCTCTATTATTCTTT
TCTAAAAAAATAATTTCAATTTTTGAATGATGTGAATGCTTTCATGTGCGATTTATTGAT
TGCATGTCAATTTTCTTCATCATAAATAAGACACGCGCGTGTAATTTATGACAAATTGTG
CTTTTTCTTTCTACATTTATCTTATGAATTAAAAATAAGATGTTTCTAAAATTTCAAAAA
ACTGAATTTTCATTCTCATCCACAAATGTCCTTTTTCATAAGAGAATTTTGACATATTTT
GTACATGACTAGCAATAATTAACATAATAATGATGACTCACTTAAATATTTAAGATATAT
TCTTTGTAAAATCATTAAAATTTAAATTGTACGACTAGATTTGAATATTGAACTAAAAAA
TTTATTTTCATTGGAAATATTTCTTGTCAAAAGCACTTATTACGTACTGTTTAGCCAACT
TATCTTTTAAAGGTGTTTTAATAATATTATCGGCATGGAAAATTTTAATGAAATATCAAC
TGTTAATGAATGTTTGTTTGTTTGTGAGACAAATTTGCTAATTTATCATGAATTCTATGA
ACATCTTTATTATGAATGAATTTTAATTCTGACAGTTGTTTTCAATGTAATTATGTGTTC
AGATGGGTTAATGA
>g8977.t11 Gene=g8977 Length=117
MQVDLESIGKWNYDISEVKPNYSYMFDFEAHFTHQKTRLWMQENWTYVFWYSGIYMIVIF
AGQQFMANRPRFELRGLLVLWNSMLALFSIIGFTRTAPELIHVLKNFGLFHSVCVPR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8977.t11 | PANTHER | PTHR11157 | FATTY ACID ACYL TRANSFERASE-RELATED | 21 | 114 | 1.2E-23 |
| 3 | g8977.t11 | PANTHER | PTHR11157:SF154 | ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN-RELATED | 21 | 114 | 1.2E-23 |
| 1 | g8977.t11 | Pfam | PF01151 | GNS1/SUR4 family | 40 | 114 | 1.7E-14 |
| 8 | g8977.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 44 | - |
| 9 | g8977.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 62 | - |
| 6 | g8977.t11 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 63 | 73 | - |
| 10 | g8977.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 94 | - |
| 7 | g8977.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 95 | 117 | - |
| 4 | g8977.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 67 | - |
| 5 | g8977.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 94 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
