General information for g8977.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative fatty acid elongation protein 3.
Parent gene
- The parent gene g8977 is located on chr_2: 34313235..34315040 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8977 | g8977.t3 | isoform | g8977.t3 | 34306080 | 34314115 |
| chr_2 | g8977 | g8977.t3 | exon | g8977.t3.exon1 | 34306080 | 34308241 |
| chr_2 | g8977 | g8977.t3 | TTS | g8977.t3 | 34306091 | 34306091 |
| chr_2 | g8977 | g8977.t3 | cds | g8977.t3.CDS1 | 34307691 | 34308104 |
| chr_2 | g8977 | g8977.t3 | exon | g8977.t3.exon2 | 34310749 | 34310886 |
| chr_2 | g8977 | g8977.t3 | exon | g8977.t3.exon3 | 34313832 | 34313894 |
| chr_2 | g8977 | g8977.t3 | exon | g8977.t3.exon4 | 34313967 | 34314115 |
| chr_2 | g8977 | g8977.t3 | TSS | g8977.t3 | 34315042 | 34315042 |
Sequences
>g8977.t3 Gene=g8977 Length=2512
ATGCAAGTCGATTTAGAATCAATCGGTAAATGGAATTATGACATCAGTGAAGTCAAACCA
AATTATTCCTACATGTTTGACTTTGAGGCTCATTTCACTCATCAAAAAACTCGCCTTTGG
ATGCAAGAAAATTGGACATATGTGTTTTGGTACTCGGGAATTTACATGATCGTAATATTT
GCTGGACAACAGTTTATGGCAAATAGACCGAGATTTGAACTAAGAGGACTTTTAGTATTG
TGGAATTCAATGTTAGCATTATTCAGTATAATTGGTTTTACTCGTACAGCACCCGAATTA
ATTCACGTTTTAAAGAACTTCGGACTATTTCATTCTGTTTGTGTTCCTAGTACATGATCG
TGTTTGCGGATTTTGGACATGGCTTTTTGTGCTTTCAAAACTGCCTGAGCTTGGTGATAC
AATTTTCATTGTACTTCGCAAGCAACCACTCATTTTCTTACACTGGTATCATCATATCAC
AGTTCTTATGTATTCATGGTTCTCATATCAAGAGTATACAGCATCAGCACGGTGGTTTGT
TGTCATGAATTACTGCGTTCATTCACTGATGTACAGCTACTATGCACTTAGAGCTATGAA
ATTTAATCCACCAAGATTTATCTCAATGATTATTACGGGTCTGCAATTAACTCAAATGAT
CATCGGATGTGCAATCAATATTTGGGCTTATGATTATCTTCAAACAGCTGGTCACACTTG
CAATATTTCATTGACAAATATTAAATTTTCAATTGCTATGTATGCTAGCTACTTCATTCT
ATTTGCACGTTTCTTCCATCTTACATATTTGTCAACTAACGCACGTAAAGGTAAACGAAC
AACATCTACAATGGCTTCACAGCAGCCAAGACAATTGGATAATAAGATCAAAGCTCAATA
AATTATTTGTAAAATTAAATGTCCCAAAACAAACAACATCGTAAATGTTATTTTAACATT
CATTAATGAAAGAATGTATGAAAATAATTTTTATCTAAAAATTGTATGTTCAGTTCAACT
ACACACAAAAAAAACATAGCATTTCAAATTTTTCCTATTTGGCTCAACAAGTTTAAAGGA
AGAAGTAAAACAAAAATTTAGTCATCGAAACAGTAAAACAACAACACATTCTAATTATGA
TTTTAGTTTTTAAGAAAGAGAGAAAAAGCTTTTGTGCGCTTAAAAAGATAATTTTTGTGT
CAAAAATACTTTTCACATATATATTTTAATTCTAGTTCATTCTATTCTATTTGTTCTTTT
ATTTTCTTTTATTCATTTAAAGAAGTTTTTGCTATGTACTATAAAAAAGTCCAAACATCT
TAAAAGAAACCTACAAAATGATTGTAAAAAGTTGAATGCAGTGTAAAGAAAAGGAAATGC
AAATATGAAGAATGACATAAAACATAAGATACCAAAGAAAGATTTTTTCGACAAAGGATT
GAAATTGACCCGCAAGATATGTGCACTGCATTCAGCTTTTATTGTATAGTTTGTTGAATA
GAGTGTTTGCAAAAATGAAGAAGAAATATACAATTTCACACACAATTGTATTAAGAGGCA
TTTACATACATATTAAAATTGTTCTTTCTTTATTCCTCAATTCAGAACTTTTTATAAATA
GATAGGTAGGACATATATAACTATTACTCTCTAAATCACAAACCACTAAATACACATACA
TACATAAACAGTCTTAGGAAAGTATCAATTAATTTATTACTTTAATTTGTTATAATGAAA
TTTTTTGCCAGAATTCTTTTTTTAATATAAAAAAAGTAAAAATAAAAATATATGATTGAT
GGTAGTGATGACTAGAATATGTTTATTTCTAAAATGAGTGAATGAGATCAACTTTTGAGA
TTCGCCCATTAGGAAATAAAGAAGAAAAAAATTAGGAACACAATTAAAAAATTTAAAATA
CAATGATGGGTTAAAAACTTATAATTATGAAGAAAAAATATTAGGTAGTTGTTCATGGGG
GTTTGATAAATTAAAATGGAAATTTTCAAAAAAAAAGAAATTTATGAAGAAGTGAGATAT
GAGAAATTTTGTTGCAAAAACTAATGCCTAAGTTATACACACAAAAACATACACGCATTA
AAATATAATGTTTAATGTTAGGTCATCATCAAAACACAAAAAAACTAATGAAATATTATA
ATTGTATAATTATAATTAAAGCTTTGGTTTACTAGCTTTTTACAATTAGCAGACGGAGAA
AAAGAAGAATAATGAAGATTAAATAATGGATTTAATTTTTGTCTTATTGTCAAGTTGGTT
GAGGAAGTAAATTGCAATCTTTTGCATTGATTTAAGTTGTTAGTTTAATGATTTGTGCTC
CCTTTTTTCTCTGCTTTTATTTTTTGTTCTCTATTCTTTTACATTCCCATTGAAAATCAT
TTCTAAAAATTTTTATTTTTTTTTCTGTTTTTCACGATTTAAAACATGGCAAGATCATTG
ATATTGAATAAAATAAAACAAATCTATTTTTTAAACATTATAAATTATTTGT
>g8977.t3 Gene=g8977 Length=137
MYSWFSYQEYTASARWFVVMNYCVHSLMYSYYALRAMKFNPPRFISMIITGLQLTQMIIG
CAINIWAYDYLQTAGHTCNISLTNIKFSIAMYASYFILFARFFHLTYLSTNARKGKRTTS
TMASQQPRQLDNKIKAQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g8977.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 137 | - |
| 2 | g8977.t3 | PANTHER | PTHR11157 | FATTY ACID ACYL TRANSFERASE-RELATED | 1 | 116 | 3.0E-35 |
| 3 | g8977.t3 | PANTHER | PTHR11157:SF17 | ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN | 1 | 116 | 3.0E-35 |
| 1 | g8977.t3 | Pfam | PF01151 | GNS1/SUR4 family | 1 | 113 | 1.5E-25 |
| 10 | g8977.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 13 | g8977.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 32 | - |
| 8 | g8977.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 33 | 43 | - |
| 12 | g8977.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 44 | 67 | - |
| 11 | g8977.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 68 | 86 | - |
| 14 | g8977.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 87 | 108 | - |
| 9 | g8977.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 109 | 137 | - |
| 6 | g8977.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 5 | g8977.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 67 | - |
| 4 | g8977.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 87 | 109 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed