Gene loci information

Transcript annotation

  • This transcript has been annotated as Elongation of very long chain fatty acids protein 6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8977 g8977.t6 isoform g8977.t6 34307261 34315040
chr_2 g8977 g8977.t6 exon g8977.t6.exon1 34307261 34308249
chr_2 g8977 g8977.t6 TTS g8977.t6 34307566 34307566
chr_2 g8977 g8977.t6 cds g8977.t6.CDS1 34307691 34308249
chr_2 g8977 g8977.t6 exon g8977.t6.exon2 34310749 34310886
chr_2 g8977 g8977.t6 cds g8977.t6.CDS2 34310749 34310886
chr_2 g8977 g8977.t6 exon g8977.t6.exon3 34313832 34313894
chr_2 g8977 g8977.t6 cds g8977.t6.CDS3 34313832 34313894
chr_2 g8977 g8977.t6 exon g8977.t6.exon4 34313967 34314227
chr_2 g8977 g8977.t6 cds g8977.t6.CDS4 34313967 34314115
chr_2 g8977 g8977.t6 exon g8977.t6.exon5 34314981 34315040
chr_2 g8977 g8977.t6 TSS g8977.t6 34315042 34315042

Sequences

>g8977.t6 Gene=g8977 Length=1511
TGTAGCCGTCGGTTTAAGTCACAACAAGTTGTAACATTCTTCAATAAAGTTGAGAAAAGT
AGAGCAAGATAACCAAAAGGAAGTTACAGTTTGTTGTTACTGAAGAATAAATTATTATCT
AGTGGTGTGTGCTTTAAAAAGGAGACGGAAAAAATATAGTTAATCAATCAAAATGCAAGT
CGATTTAGAATCAATCGGTAAATGGAATTATGACATCAGTGAAGTCAAACCAAATTATTC
CTACATGTTTGACTTTGAGGCTCATTTCACTCATCAAAAAACTCGCCTTTGGATGCAAGA
AAATTGGACATATGTGTTTTGGTACTCGGGAATTTACATGATCGTAATATTTGCTGGACA
ACAGTTTATGGCAAATAGACCGAGATTTGAACTAAGAGGACTTTTAGTATTGTGGAATTC
AATGTTAGCATTATTCAGTATAATTGGTTTTACTCGTACAGCACCCGAATTAATTCACGT
TTTAAAGAACTTCGGACTATTTCATTCTGTTTGTGTTCCTAGTTATATTTTACATGATCG
TGTTTGCGGATTTTGGACATGGCTTTTTGTGCTTTCAAAACTGCCTGAGCTTGGTGATAC
AATTTTCATTGTACTTCGCAAGCAACCACTCATTTTCTTACACTGGTATCATCATATCAC
AGTTCTTATGTATTCATGGTTCTCATATCAAGAGTATACAGCATCAGCACGGTGGTTTGT
TGTCATGAATTACTGCGTTCATTCACTGATGTACAGCTACTATGCACTTAGAGCTATGAA
ATTTAATCCACCAAGATTTATCTCAATGATTATTACGGGTCTGCAATTAACTCAAATGAT
CATCGGATGTGCAATCAATATTTGGGCTTATGATTATCTTCAAACAGCTGGTCACACTTG
CAATATTTCATTGACAAATATTAAATTTTCAATTGCTATGTATGCTAGCTACTTCATTCT
ATTTGCACGTTTCTTCCATCTTACATATTTGTCAACTAACGCACGTAAAGGTAAACGAAC
AACATCTACAATGGCTTCACAGCAGCCAAGACAATTGGATAATAAGATCAAAGCTCAATA
AATTATTTGTAAAATTAAATGTCCCAAAACAAACAACATCGTAAATGTTATTTTAACATT
CATTAATGAAAGAATGTATGAAAATAATTTTTATCTAAAAATTGTATGTTCAGTTCAACT
ACACACAAAAAAAACATAGCATTTCAAATTTTTCCTATTTGGCTCAACAAGTTTAAAGGA
AGAAGTAAAACAAAAATTTAGTCATCGAAACAGTAAAACAACAACACATTCTAATTATGA
TTTTAGTTTTTAAGAAAGAGAGAAAAAGCTTTTGTGCGCTTAAAAAGATAATTTTTGTGT
CAAAAATACTTTTCACATATATATTTTAATTCTAGTTCATTCTATTCTATTTGTTCTTTT
ATTTTCTTTTATTCATTTAAAGAAGTTTTTGCTATGTACTATAAAAAAGTCCAAACATCT
TAAAAGAAACC

>g8977.t6 Gene=g8977 Length=302
MQVDLESIGKWNYDISEVKPNYSYMFDFEAHFTHQKTRLWMQENWTYVFWYSGIYMIVIF
AGQQFMANRPRFELRGLLVLWNSMLALFSIIGFTRTAPELIHVLKNFGLFHSVCVPSYIL
HDRVCGFWTWLFVLSKLPELGDTIFIVLRKQPLIFLHWYHHITVLMYSWFSYQEYTASAR
WFVVMNYCVHSLMYSYYALRAMKFNPPRFISMIITGLQLTQMIIGCAINIWAYDYLQTAG
HTCNISLTNIKFSIAMYASYFILFARFFHLTYLSTNARKGKRTTSTMASQQPRQLDNKIK
AQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g8977.t6 MobiDBLite mobidb-lite consensus disorder prediction 283 302 -
2 g8977.t6 PANTHER PTHR11157 FATTY ACID ACYL TRANSFERASE-RELATED 21 281 1.1E-93
3 g8977.t6 PANTHER PTHR11157:SF17 ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 21 281 1.1E-93
1 g8977.t6 Pfam PF01151 GNS1/SUR4 family 40 278 4.9E-68
17 g8977.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 47 -
21 g8977.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 48 66 -
15 g8977.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 67 77 -
25 g8977.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 78 97 -
19 g8977.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 98 108 -
26 g8977.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 109 133 -
14 g8977.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 134 152 -
22 g8977.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 153 172 -
16 g8977.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 173 177 -
24 g8977.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 178 197 -
13 g8977.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 198 208 -
20 g8977.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 209 232 -
18 g8977.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 233 251 -
23 g8977.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 252 273 -
12 g8977.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 274 302 -
10 g8977.t6 ProSitePatterns PS01188 ELO family signature. 153 161 -
5 g8977.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 45 67 -
8 g8977.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 77 94 -
4 g8977.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 153 172 -
6 g8977.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 176 198 -
9 g8977.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 210 232 -
7 g8977.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 252 274 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values