Gene loci information

Transcript annotation

  • This transcript has been annotated as Elongation of very long chain fatty acids protein 6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8977 g8977.t7 TTS g8977.t7 34306777 34306777
chr_2 g8977 g8977.t7 isoform g8977.t7 34307691 34310886
chr_2 g8977 g8977.t7 exon g8977.t7.exon1 34307691 34308249
chr_2 g8977 g8977.t7 cds g8977.t7.CDS1 34307691 34308249
chr_2 g8977 g8977.t7 exon g8977.t7.exon2 34310749 34310886
chr_2 g8977 g8977.t7 cds g8977.t7.CDS2 34310749 34310849
chr_2 g8977 g8977.t7 TSS g8977.t7 NA NA

Sequences

>g8977.t7 Gene=g8977 Length=697
ATTTGAACTAAGAGGACTTTTAGTATTGTGGAATTCAATGTTAGCATTATTCAGTATAAT
TGGTTTTACTCGTACAGCACCCGAATTAATTCACGTTTTAAAGAACTTCGGACTATTTCA
TTCTGTTTGTGTTCCTAGTTATATTTTACATGATCGTGTTTGCGGATTTTGGACATGGCT
TTTTGTGCTTTCAAAACTGCCTGAGCTTGGTGATACAATTTTCATTGTACTTCGCAAGCA
ACCACTCATTTTCTTACACTGGTATCATCATATCACAGTTCTTATGTATTCATGGTTCTC
ATATCAAGAGTATACAGCATCAGCACGGTGGTTTGTTGTCATGAATTACTGCGTTCATTC
ACTGATGTACAGCTACTATGCACTTAGAGCTATGAAATTTAATCCACCAAGATTTATCTC
AATGATTATTACGGGTCTGCAATTAACTCAAATGATCATCGGATGTGCAATCAATATTTG
GGCTTATGATTATCTTCAAACAGCTGGTCACACTTGCAATATTTCATTGACAAATATTAA
ATTTTCAATTGCTATGTATGCTAGCTACTTCATTCTATTTGCACGTTTCTTCCATCTTAC
ATATTTGTCAACTAACGCACGTAAAGGTAAACGAACAACATCTACAATGGCTTCACAGCA
GCCAAGACAATTGGATAATAAGATCAAAGCTCAATAA

>g8977.t7 Gene=g8977 Length=219
MLALFSIIGFTRTAPELIHVLKNFGLFHSVCVPSYILHDRVCGFWTWLFVLSKLPELGDT
IFIVLRKQPLIFLHWYHHITVLMYSWFSYQEYTASARWFVVMNYCVHSLMYSYYALRAMK
FNPPRFISMIITGLQLTQMIIGCAINIWAYDYLQTAGHTCNISLTNIKFSIAMYASYFIL
FARFFHLTYLSTNARKGKRTTSTMASQQPRQLDNKIKAQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8977.t7 MobiDBLite mobidb-lite consensus disorder prediction 200 219 -
2 g8977.t7 PANTHER PTHR11157 FATTY ACID ACYL TRANSFERASE-RELATED 1 198 1.6E-73
3 g8977.t7 PANTHER PTHR11157:SF17 ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 1 198 1.6E-73
1 g8977.t7 Pfam PF01151 GNS1/SUR4 family 1 195 3.0E-56
15 g8977.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 15 -
16 g8977.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 1 -
17 g8977.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 2 10 -
23 g8977.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 11 15 -
14 g8977.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 16 24 -
19 g8977.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 25 50 -
10 g8977.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 51 69 -
22 g8977.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 70 89 -
12 g8977.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 90 94 -
18 g8977.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 95 114 -
11 g8977.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 115 125 -
21 g8977.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 126 149 -
13 g8977.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 150 168 -
20 g8977.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 169 190 -
9 g8977.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 191 219 -
7 g8977.t7 ProSitePatterns PS01188 ELO family signature. 70 78 -
5 g8977.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 93 115 -
6 g8977.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 127 149 -
4 g8977.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 169 191 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values