General information for g899.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g899 is located on chr_3: 6770975..6773035 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g899 | g899.t1 | TSS | g899.t1 | 6770889 | 6770889 |
| chr_3 | g899 | g899.t1 | isoform | g899.t1 | 6770975 | 6773035 |
| chr_3 | g899 | g899.t1 | exon | g899.t1.exon1 | 6770975 | 6773035 |
| chr_3 | g899 | g899.t1 | cds | g899.t1.CDS1 | 6770975 | 6773035 |
| chr_3 | g899 | g899.t1 | TTS | g899.t1 | NA | NA |
Sequences
>g899.t1 Gene=g899 Length=2061
ATGGAACAAAAAATTACTTGTGTATTTGATACTAGATATAATGCTAAACTATATACATGT
GAAGTTGAAAATCAAGAAATATGTAGCAAAAAAGTCCTTAGCTTTATTGGAAAACATTTG
ACTGGGAAAGACAATACAGATGTGAAGTTTTTGAGCTTTTCTTACTGCAATATTTCGAAA
TTTCCACAAGGCTTAACAAAAGTATTTCCTAAGCTAATTCATATTCAACTAAATGAATGT
GGATTGTCACAACTTACAAGAAATTGTTTGAAAGAATATTCAAATTTGACTGCTTTGTAT
CTTGCTGGAAATAATATTCCTTATCTTCCAGGTGACTTATTTGAAGACCTAAAATTTTTA
AAAATTTGCAATCTCAGCAAATCAAAAATTGAAGTGATTGAGCCCAATATTTTAGATAAA
TGTGCACAATTGAAATATATGAACTTTCAAAAAAATATTTGTATAAATAAATGCTTTAAT
TCAATCACCTTTGACTCATCACTTGAAAGAATGAAGAAAGAATTACGAGAAAAATATCCA
AGATGGGGAGATAGAATAAAAAATTTTAAAGGCAAAATTACATCGGAAGTTTTAAAATTG
ATCAAAGAAATATCTGAAAAAGATGAAACTATTCAAAAAATTAAAAAAGAATCAGAAAGT
TATGAAAGTGCTTTGATTATGCTGGAAAATAAAAGATATCAAGAAATTCAGGTACTGAAT
ACAAATAAAGATGATCAAATTCACTCTTTAGAGCAAATTATCAATGAATTAAATGGAAAA
TTGAAGAGTTTTGAAAATAAAAATGAAGAGATAGAAAATTTGGAACAGAAAGTTCGAGAC
ACTGAACAACTAATGACCAAGAAATTACAAGAACAAAAATGTTCAAATGACGAAGAAATC
ATGAAACTTAAGAAGGAATGTCAAACATTTCAAAGGAAATCGAAGAAACTTGAAGCTGTT
TTAGAAACAACAACTGAAAATGCTAAAATAAAACTAAATGAAAGTGAAAGTAAAAATCAA
AAAGTGAGAGCATTGCTGATTGCAAGAATTGAAATGATTGAAAATCTTAAGCAAAAATTA
TCCATAATTAAAAAGGAAAAAAAAGAATTTCAAAACATGATTGTAAATAAGGACAAGAGA
ATTAAAATAATTGAGGAAAAGTTGAGATTATGTGACATTCAAATTAAAAAGTTTAATGAA
GAAAATTCTAAACTCTTGAGGACTATTGATGCAGTTAAAGCAGAAAATCGAGAGTTATTA
GAACATAAAATTAAAAATGTTCAAATATTGGAAGATTTTGAACAAAAAATGAAAAACAAA
CTATTGGAATCATCAAAAGAAATGCAAGAACTTCTAAAGCCTTATCAAAATTTGCTTGAA
ACAGAAGATAGGAATCAGGAAATTATAAAAGCAAATTCTCAAACTCTTGAAAGAAATAAA
TTTTTGGAGCATAAACTTCTTGAAGCAGAGGCAGAGAATGAAAGTTTGAAATTGCAGTCC
GGATTTACTCAAGATTTTAAAACATTGATGGAAAACGATGAATTAAAAGATATTACAATC
ATAACAGACAACGAAGAATTTAAAGCTCATAAATTTGTGCTTGCTGCTCGCAGTCCAACA
TTTGCGAGTATTTTCATGAAAAATGTTCACGCTAAACGTTTAACTTTAACTGATGTATCG
ACTGACATTTTTCACATAATTTTAAATTTTATTTACACTTTAAATTTTCCTAACTCTAAT
GAGATTGATTACATAGAACTGTTTAAAGCTAGCAATAAGTTTCAAATTGAAAAATTAAAA
GTTTTTGCAACTAATAAAATGTTGCAACAAATTAATTTTGATAATGCTCTTGAAGTATTA
AAAATAAGCAACAAATATGGATATGAAGAATTACGAAAGAAATCATTTGATGAAATTAAA
AATTTTTTTGATACTGAAAAAATTCATGAAAGCCTTGCATTTGACACTAAGAAACTTGAG
AAATTGATTGAACTGAAAAAAGAGAAAAATAAAATGATCGCCGAATTAGAATTAGAATTC
AAAAAATTATTAGAAGAATGA
>g899.t1 Gene=g899 Length=686
MEQKITCVFDTRYNAKLYTCEVENQEICSKKVLSFIGKHLTGKDNTDVKFLSFSYCNISK
FPQGLTKVFPKLIHIQLNECGLSQLTRNCLKEYSNLTALYLAGNNIPYLPGDLFEDLKFL
KICNLSKSKIEVIEPNILDKCAQLKYMNFQKNICINKCFNSITFDSSLERMKKELREKYP
RWGDRIKNFKGKITSEVLKLIKEISEKDETIQKIKKESESYESALIMLENKRYQEIQVLN
TNKDDQIHSLEQIINELNGKLKSFENKNEEIENLEQKVRDTEQLMTKKLQEQKCSNDEEI
MKLKKECQTFQRKSKKLEAVLETTTENAKIKLNESESKNQKVRALLIARIEMIENLKQKL
SIIKKEKKEFQNMIVNKDKRIKIIEEKLRLCDIQIKKFNEENSKLLRTIDAVKAENRELL
EHKIKNVQILEDFEQKMKNKLLESSKEMQELLKPYQNLLETEDRNQEIIKANSQTLERNK
FLEHKLLEAEAENESLKLQSGFTQDFKTLMENDELKDITIITDNEEFKAHKFVLAARSPT
FASIFMKNVHAKRLTLTDVSTDIFHIILNFIYTLNFPNSNEIDYIELFKASNKFQIEKLK
VFATNKMLQQINFDNALEVLKISNKYGYEELRKKSFDEIKNFFDTEKIHESLAFDTKKLE
KLIELKKEKNKMIAELELEFKKLLEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g899.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 517 | 594 | 1.55405E-20 |
| 15 | g899.t1 | Coils | Coil | Coil | 197 | 231 | - |
| 9 | g899.t1 | Coils | Coil | Coil | 247 | 291 | - |
| 13 | g899.t1 | Coils | Coil | Coil | 300 | 320 | - |
| 10 | g899.t1 | Coils | Coil | Coil | 353 | 373 | - |
| 12 | g899.t1 | Coils | Coil | Coil | 395 | 422 | - |
| 11 | g899.t1 | Coils | Coil | Coil | 472 | 499 | - |
| 14 | g899.t1 | Coils | Coil | Coil | 659 | 686 | - |
| 7 | g899.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 16 | 202 | 4.1E-19 |
| 8 | g899.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 485 | 641 | 8.2E-34 |
| 3 | g899.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 371 | 664 | 5.4E-25 |
| 4 | g899.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 371 | 664 | 5.4E-25 |
| 1 | g899.t1 | Pfam | PF13855 | Leucine rich repeat | 94 | 152 | 6.5E-7 |
| 2 | g899.t1 | Pfam | PF00651 | BTB/POZ domain | 506 | 609 | 1.0E-20 |
| 18 | g899.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 516 | 580 | 17.293 |
| 17 | g899.t1 | SMART | SM00225 | BTB_4 | 516 | 611 | 1.1E-20 |
| 5 | g899.t1 | SUPERFAMILY | SSF52058 | L domain-like | 43 | 161 | 1.49E-18 |
| 6 | g899.t1 | SUPERFAMILY | SSF54695 | POZ domain | 499 | 611 | 6.06E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed