General information for g8990.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Palmitoyltransferase app.
Parent gene
- The parent gene g8990 is located on chr_2: 34407825..34408936 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8990 | g8990.t1 | isoform | g8990.t1 | 34403794 | 34408633 |
| chr_2 | g8990 | g8990.t1 | exon | g8990.t1.exon1 | 34403794 | 34404152 |
| chr_2 | g8990 | g8990.t1 | cds | g8990.t1.CDS1 | 34403794 | 34404152 |
| chr_2 | g8990 | g8990.t1 | exon | g8990.t1.exon2 | 34404234 | 34404362 |
| chr_2 | g8990 | g8990.t1 | cds | g8990.t1.CDS2 | 34404234 | 34404362 |
| chr_2 | g8990 | g8990.t1 | exon | g8990.t1.exon3 | 34404441 | 34404455 |
| chr_2 | g8990 | g8990.t1 | cds | g8990.t1.CDS3 | 34404441 | 34404455 |
| chr_2 | g8990 | g8990.t1 | exon | g8990.t1.exon4 | 34404521 | 34404822 |
| chr_2 | g8990 | g8990.t1 | cds | g8990.t1.CDS4 | 34404521 | 34404822 |
| chr_2 | g8990 | g8990.t1 | exon | g8990.t1.exon5 | 34404880 | 34405091 |
| chr_2 | g8990 | g8990.t1 | cds | g8990.t1.CDS5 | 34404880 | 34405091 |
| chr_2 | g8990 | g8990.t1 | exon | g8990.t1.exon6 | 34405756 | 34406635 |
| chr_2 | g8990 | g8990.t1 | cds | g8990.t1.CDS6 | 34405756 | 34406635 |
| chr_2 | g8990 | g8990.t1 | exon | g8990.t1.exon7 | 34407825 | 34408633 |
| chr_2 | g8990 | g8990.t1 | cds | g8990.t1.CDS7 | 34407825 | 34408633 |
| chr_2 | g8990 | g8990.t1 | TTS | g8990.t1 | 34408936 | 34408936 |
| chr_2 | g8990 | g8990.t1 | TSS | g8990.t1 | NA | NA |
Sequences
>g8990.t1 Gene=g8990 Length=2706
ATGACATCACAGCAACAACAAAAAGTTACGAGAAAATGGGAAGTATTTCCCGGAAGAAAC
AAATTTTATTGTGATGGATATTTAATGACAGCACCAAACACCAGCATATTTTATTTAACT
GTTGTACTTATAACAGGAACTAGTACCCTTTTCTTTGTCTTCGATTGTCCTTTCCTTGCC
GAAAAAATCACATTAGGCATACCAATTATTGGTGGCATTCTTTACGTTTTTACAATGTGC
TCTCTGCTAAGAACGACATTCAGTGATCCGGGAATTTTGCCACGTGCTTCATGTGATGAG
GCTGCTTATATTGAAAAGCAAATTGAAGTTCCAAATTCACTAAATAGTCCAACATATAGA
CCGCCGCCAAGAACAAAAGAAGTTTTTGTACGTGGTCAGACTGTAAAACTCAAATATTGC
TTCACATGCAAGATTTTTCGACCACCAAGAGCATCTCATTGTAGCTTATGTGATAACTGT
GTCGATAGATTTGATCATCATTGCCCATGGGTTGGAAATTGTGTTGGACGACGAAATTAT
CGCTTCTTCTATATGTTCATCGTGTCACTAGCCTTTCTGGCAGTTTTTATTTTTGCATGC
GCACTTACGCATTTAGTACTGTTGCAAGCGGAAGCTAAAGATTTCTTAGATGTATTGAAA
AGGTCACCATTTAGTGTAGTTGTATTAGCCATTTGTTTTCTCTCTGTATGGTCGGTTATT
GGACTTGCTGGCTTTCACACATACCTCACATCATCCGATCAAACGACCAATGAAGACATT
AAAGGTTCATTTTCAAATAAAGGCGGAGCTACTAATCCATATTCGAGGGGCAATATTTGT
TTAAATTGCTTTTATATTTTATGTGGACCGCTTCAACCATCATTGATTGATAGACGTGGA
ATAATTACAGAAGAATATAGACTTCAAATGCAAGATAAAAATACAATAGCAGCAGCACCA
CCAATAGTAGTTCAACAGCTCGGGTCTGTTGATTCAAAAGTTTATAATCATGTTGAGTTG
GAAGTACCATCAAGTATGAATAATTCAGCATCAACACATATGCAAGGCGTTTATAGACAA
CGAAGTTACGACAATCTACAAAACGGTAAGTTGCGGTCTCCATTTCATCGAAATTCAATC
AAGAGTCTTCACTTGCCGTCTTCTTATTCAAATAATCAACTTACATTGAACAAACGATTC
AGTTTGAGTATTAATCCTAATAATAATAATAATAGTAATGTAAATTATATGAATCGTGGT
GGAATTTTGACACCACAGCATCATCATTATCAGCAAACTCAAGCTATTCCAAGTAATTTT
AAATTTGTATCGCCACAATCGAGATATGACATGAGTCAGAGCAATTATGACTCGAATTCT
TTACCACGTTATCCATACCATAAAAATCGTGCCATTCATGGTGTTCATCATCGACTTGAT
GGCACATGTGTGGAGTATTATCGTCACGTACCAATAAGACATCCAACTACACCACCACCT
GCACCGCCAATTAAGATGTCACCTCAATCGAATACAGAAGAACAAATGTTATTACCCACA
CCAACATCATCGACCTCATCAGGTGACAACAATTGCAGTGAATTTGATCCAATGATAAAT
ATAAATGGCACAAAAGTAAGAAATGGAGGACTTGATCATATGACACATTATCGAGCATGC
AAGCGACAGCTTCAACAAGCATCACAATTTCTTCATCCAAATGCGCAACATCAAGTTCAT
ATAGACAATTATATTCAGCAGTTTAGTCATCATAGTCCTTATAAAAAGTACCTTAATGCC
GTCTCTAATCATCAACTGCAATTGTCACCACAAAACATGCATCAAAATTATCACAATCCA
AATAAACGACACTCGAATGTTTATGAATACCATTTCAATAAAACTTCAACGTCAGTTGCA
CATTTGGTTGAAAATGAGCTTCCACTGGCATCCGTGATTGTTCCATCAACATCGTCCACA
TCGACAATTGATAAACGCTCACGATTATCACAGAGTAATATAACATCGACATCAACGATA
AATGACATTCAAGATGTGAATGAGATTGTGTCTGAGAGTAGTCTTAGCAGCAATAATGTC
AATATTATTGATCAGCAAAAAAATGGAAGCTATAACAATTTGTTATATCGTGCGGAGAAT
GCAAATGAGGTCGAGATAGAGAAGGTCAAGAAGAAGAATGGAGGAGCAGATGTGACACAA
AATGTCTATAGCAATATTCCGCCTTCTCCAAATGTACCGAATATCCTCAAAAATGCTGCC
GCAGATCATGTATATAGTAATATAGATGAGACTGTAAATGGCGGAAATGGCTATATAAGT
ACATTAGATTTAGATCTCGATGATCCTTTAGATGCATTCATAAAGAAAAAAGAAATACCA
AATAGTAATCAATCTGTCTATAACATTTCAACAACAAGCACGATGCCAATTGATAGCACA
CATAGTAACAATAAAATGATCCTGCCATCAATATCATCATCATCTTCCACAACAGGAACA
CAAATTACGTCCATTGAACTTAAGAATGTCTTAAATGCAGTTGCACTGCAAAAGTCAAAT
AATCAAATAAATGAGATACCTGTAAATATCGGTCCTGCCTTGCGTCAACAGACAATGATT
GACTCATCGCTTGATCTCGATTCTATTGACTCACAAGTGGGTCTGATGAACAAAACAATT
GTATGA
>g8990.t1 Gene=g8990 Length=901
MTSQQQQKVTRKWEVFPGRNKFYCDGYLMTAPNTSIFYLTVVLITGTSTLFFVFDCPFLA
EKITLGIPIIGGILYVFTMCSLLRTTFSDPGILPRASCDEAAYIEKQIEVPNSLNSPTYR
PPPRTKEVFVRGQTVKLKYCFTCKIFRPPRASHCSLCDNCVDRFDHHCPWVGNCVGRRNY
RFFYMFIVSLAFLAVFIFACALTHLVLLQAEAKDFLDVLKRSPFSVVVLAICFLSVWSVI
GLAGFHTYLTSSDQTTNEDIKGSFSNKGGATNPYSRGNICLNCFYILCGPLQPSLIDRRG
IITEEYRLQMQDKNTIAAAPPIVVQQLGSVDSKVYNHVELEVPSSMNNSASTHMQGVYRQ
RSYDNLQNGKLRSPFHRNSIKSLHLPSSYSNNQLTLNKRFSLSINPNNNNNSNVNYMNRG
GILTPQHHHYQQTQAIPSNFKFVSPQSRYDMSQSNYDSNSLPRYPYHKNRAIHGVHHRLD
GTCVEYYRHVPIRHPTTPPPAPPIKMSPQSNTEEQMLLPTPTSSTSSGDNNCSEFDPMIN
INGTKVRNGGLDHMTHYRACKRQLQQASQFLHPNAQHQVHIDNYIQQFSHHSPYKKYLNA
VSNHQLQLSPQNMHQNYHNPNKRHSNVYEYHFNKTSTSVAHLVENELPLASVIVPSTSST
STIDKRSRLSQSNITSTSTINDIQDVNEIVSESSLSSNNVNIIDQQKNGSYNNLLYRAEN
ANEVEIEKVKKKNGGADVTQNVYSNIPPSPNVPNILKNAAADHVYSNIDETVNGGNGYIS
TLDLDLDDPLDAFIKKKEIPNSNQSVYNISTTSTMPIDSTHSNNKMILPSISSSSSTTGT
QITSIELKNVLNAVALQKSNNQINEIPVNIGPALRQQTMIDSSLDLDSIDSQVGLMNKTI
V
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8990.t1 | PANTHER | PTHR22883:SF28 | PALMITOYLTRANSFERASE ZDHHC14-RELATED | 9 | 346 | 5.8E-145 |
| 3 | g8990.t1 | PANTHER | PTHR22883 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN | 9 | 346 | 5.8E-145 |
| 1 | g8990.t1 | Pfam | PF01529 | DHHC palmitoyltransferase | 136 | 261 | 3.8E-37 |
| 14 | g8990.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 35 | - |
| 15 | g8990.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 36 | 54 | - |
| 10 | g8990.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 55 | 65 | - |
| 17 | g8990.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 87 | - |
| 13 | g8990.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 88 | 181 | - |
| 18 | g8990.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 182 | 207 | - |
| 11 | g8990.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 208 | 226 | - |
| 16 | g8990.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 227 | 249 | - |
| 12 | g8990.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 250 | 901 | - |
| 9 | g8990.t1 | ProSiteProfiles | PS50216 | DHHC domain profile. | 138 | 188 | 28.623 |
| 5 | g8990.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 35 | 54 | - |
| 7 | g8990.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 64 | 83 | - |
| 6 | g8990.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 186 | 208 | - |
| 4 | g8990.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 223 | 245 | - |
| 8 | g8990.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 274 | 296 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016409 | palmitoyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K16675 (palmitoyltransferase ZDHHC9/14/18)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
