General information for g8990.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8990 is located on chr_2: 34407825..34408936 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8990 | g8990.t5 | isoform | g8990.t5 | 34407825 | 34408936 |
| chr_2 | g8990 | g8990.t5 | exon | g8990.t5.exon1 | 34407825 | 34408936 |
| chr_2 | g8990 | g8990.t5 | cds | g8990.t5.CDS1 | 34408370 | 34408633 |
| chr_2 | g8990 | g8990.t5 | TTS | g8990.t5 | 34408936 | 34408936 |
| chr_2 | g8990 | g8990.t5 | TSS | g8990.t5 | NA | NA |
Sequences
>g8990.t5 Gene=g8990 Length=1112
ATAAAACTTCAACGTCAGTTGCACATTTGGTTGAAAATGAGCTTCCACTGGCATCCGTGA
TTGTTCCATCAACATCGTCCACATCGACAATTGATAAACGCTCACGATTATCACAGAGTA
ATATAACATCGACATCAACGATAAATGACATTCAAGATGTGAATGAGATTGTGTCTGAGA
GTAGTCTTAGCAGCAATAATGTCAATATTATTGATCAGCAAAAAAATGGAAGCTATAACA
ATTTGTTATATCGTGCGGAGAATGCAAATGAGGTCGAGATAGAGAAGGTCAAGAAGAAGA
ATGGAGGAGCAGATGTGACACAAAATGTCTATAGCAATATTCCGCCTTCTCCAAATGTAC
CGAATATCCTCAAAAATGCTGCCGCAGATCATGTATATAGTAATATAGATGAGACTGTAA
ATGGCGGAAATGGCTATATAAGTACATTAGATTTAGATCTCGATGATCCTTTAGATGCAT
TCATAAAGAAAAAAGAAATACCAAATAGTAATCAATCTGTCTATAACATTTCAACAACAA
GCACGATGCCAATTGATAGCACACATAGTAACAATAAAATGATCCTGCCATCAATATCAT
CATCATCTTCCACAACAGGAACACAAATTACGTCCATTGAACTTAAGAATGTCTTAAATG
CAGTTGCACTGCAAAAGTCAAATAATCAAATAAATGAGATACCTGTAAATATCGGTCCTG
CCTTGCGTCAACAGACAATGATTGACTCATCGCTTGATCTCGATTCTATTGACTCACAAG
TGGGTCTGATGAACAAAACAATTGTATGATTGTGGTCGACTGATGAGATTTTCCTTCGGA
TGCTTATTAAGTGGAAAGTGCGTGTCTTCCGTTAGATTTACATTTCATTTTTTGATAAAA
AATATTTTTAACTAATTAATAGAAAAGTACGTAGAAAAATCAAATGAGTATTTTTTTGCT
ATTAAACTCACAAACACACATAAATAAATCAGGAATTAGAAACAAATGGGAAAAAATATT
TGGCTTTTTATGACCATGTTTATGTTATAGCCAGCAAAAAATATTATGATAAACACCACA
CATTTTTTGATTAATAAAAAATTATTATAAAA
>g8990.t5 Gene=g8990 Length=87
MPIDSTHSNNKMILPSISSSSSTTGTQITSIELKNVLNAVALQKSNNQINEIPVNIGPAL
RQQTMIDSSLDLDSIDSQVGLMNKTIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g8990.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
