General information for g8992.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Signal transducer and transcription activator.
Parent gene
- The parent gene g8992 is located on chr_2: 34418374..34420073 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8992 | g8992.t13 | isoform | g8992.t13 | 34414010 | 34414492 |
| chr_2 | g8992 | g8992.t13 | exon | g8992.t13.exon1 | 34414010 | 34414492 |
| chr_2 | g8992 | g8992.t13 | cds | g8992.t13.CDS1 | 34414047 | 34414490 |
| chr_2 | g8992 | g8992.t13 | TSS | g8992.t13 | NA | NA |
| chr_2 | g8992 | g8992.t13 | TTS | g8992.t13 | NA | NA |
Sequences
>g8992.t13 Gene=g8992 Length=483
TGAAACAACAAAGCAACTGTCAGTCAGTTTTCGTAACATGCAATTGAAGAAAATTAAGAG
AGCTGAAAAGAAAGGTACAGAGAGTGTGATGGATGAGAAGTTTGCATTGCTCTTCCAGTC
AAGCTTTGCCATTGGCCATGGTGATTTGGTATTTAGTGTTTGGGCACTTTCATTGCCTGT
TGTTGTTATTGTGCATGGCAATCAGGAACCACAGTCATGGGCCACAATCACATGGGATAA
TGCATTTGCCGAAATCAATCGTCAGCCATTCGCAGTGCCCGAAAAAGTGCCATGGAATCG
TTTAGCTGAGGCACTTAATATGAAATTCCGCGCATCAACTGGTCGCACACTAACACCAGA
AAATTTGCATTTTTTGGCTGAGAAAGCTTTTAAATTACAAGTTCCAATGCCGCCCACAGA
CGATTATCAAATCACTTGGTCACAATTCTGTAAAGAACCTTTGCCAGATCGCACATTCAC
TTT
>g8992.t13 Gene=g8992 Length=148
MQLKKIKRAEKKGTESVMDEKFALLFQSSFAIGHGDLVFSVWALSLPVVVIVHGNQEPQS
WATITWDNAFAEINRQPFAVPEKVPWNRLAEALNMKFRASTGRTLTPENLHFLAEKAFKL
QVPMPPTDDYQITWSQFCKEPLPDRTFT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8992.t13 | Gene3D | G3DSA:2.60.40.630 | - | 1 | 53 | 0 |
| 6 | g8992.t13 | Gene3D | G3DSA:1.10.238.10 | - | 54 | 148 | 0 |
| 2 | g8992.t13 | PANTHER | PTHR11801 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION | 1 | 148 | 0 |
| 3 | g8992.t13 | PANTHER | PTHR11801:SF48 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 6 | 1 | 148 | 0 |
| 1 | g8992.t13 | Pfam | PF02864 | STAT protein, DNA binding domain | 1 | 51 | 0 |
| 4 | g8992.t13 | SUPERFAMILY | SSF49417 | p53-like transcription factors | 1 | 148 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042025 | host cell nucleus | CC |
| GO:0003677 | DNA binding | MF |
| GO:0007165 | signal transduction | BP |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
