Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g900 g900.t1 TSS g900.t1 6773208 6773208
chr_3 g900 g900.t1 isoform g900.t1 6773299 6774015
chr_3 g900 g900.t1 exon g900.t1.exon1 6773299 6774015
chr_3 g900 g900.t1 cds g900.t1.CDS1 6773299 6774015
chr_3 g900 g900.t1 TTS g900.t1 NA NA

Sequences

>g900.t1 Gene=g900 Length=717
ATGGAACAAAAAATAACATCTTATTATTTTAACACTAAATATTACAATGAAGAAGTTTAT
ATGTGTATAGTTGAAAACCAAACAATTGACAAAAAATCACCATTAAAGTTTGTCGATTTT
CATGGCAAAGAAAATAATAATGACGTACTTGCAGTGTCATTTAGAGACTGTAATATTTCT
AGAATTCCTCAAGGCTTAACAAAAGTTTTTCCAAATCTTAAGCATCTTATAATTTTCAAT
TCTGGACTTTCTCATGTAAATCGTGAAAGTTTAAAAGAATATTGTGGTTTAAGGTCATTG
AGCCTTTCTTCAAACAATATTTTATTCATCCCAGGAGATTTACTAGAAGATATGAAAGAC
TTGGAAATTTTTATCGTGTCAAATTCCAAAATTCAATTCATAGAGCCAAACATATTTGAT
AAACTTAATAATCTTAAACGCGTCGACCTTACTAGAAATATGTGTATTAATAAACGTTAT
GACTCATTAAATCCATCACTTGAAAACGCTACGCTAGAAGAGATAAAGAAGGAGTTGAAA
ATTAAAAAGAATTCTTCATGGAAAAATATTATCGAAAGTATCAAGAATTTTTATGAAACT
GAAACTGATGGCTTAAGAAATGAAATTGAAAATCAAAATAAAACAACAATAATGCTTCTA
ATGCAATTTCATTCATGTGTTCTACTATTTCCACACCAAAAAGAGTATCAAGCGTGA

>g900.t1 Gene=g900 Length=238
MEQKITSYYFNTKYYNEEVYMCIVENQTIDKKSPLKFVDFHGKENNNDVLAVSFRDCNIS
RIPQGLTKVFPNLKHLIIFNSGLSHVNRESLKEYCGLRSLSLSSNNILFIPGDLLEDMKD
LEIFIVSNSKIQFIEPNIFDKLNNLKRVDLTRNMCINKRYDSLNPSLENATLEEIKKELK
IKKNSSWKNIIESIKNFYETETDGLRNEIENQNKTTIMLLMQFHSCVLLFPHQKEYQA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g900.t1 Coils Coil Coil 195 215 -
3 g900.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 9 207 2.9E-19
1 g900.t1 Pfam PF13855 Leucine rich repeat 96 153 1.0E-10
2 g900.t1 SUPERFAMILY SSF52058 L domain-like 51 157 1.51E-17

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed