Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g9001 g9001.t1 TSS g9001.t1 34479243 34479243
chr_2 g9001 g9001.t1 isoform g9001.t1 34479685 34480995
chr_2 g9001 g9001.t1 exon g9001.t1.exon1 34479685 34480995
chr_2 g9001 g9001.t1 cds g9001.t1.CDS1 34479685 34480995
chr_2 g9001 g9001.t1 TTS g9001.t1 NA NA

Sequences

>g9001.t1 Gene=g9001 Length=1311
ATGAGTAGAAAAACTCCAATTCAATTTGTGGTAGCGACAACAACAACAACAAACAACTTG
CAGCACACGCAAATGGAACAAAAACCCATCATAATTTCTTCTTCTTCTTCACTTTGCTCA
TCATCCTCCACCACTTCATCGTCTTCTTCTTCATCGAGTTCATCTACAAATAATTTAGCG
AATGTCAACTTGTTAAATGGAAAAATACCCAAAACCATTATTGTGACAACGCCGCCAATT
TGCTCATCTGTTTCATCGACAGTGACAAATAGTAGTAGTAGTAGTAGTGGAAATGGAAGT
AACAAAACATCATCGCTACTGATTGATCTGTCAAATGTTGAGCAAATGTCTAGTAAAACT
ATAAATCTTCCGATGAATGAAGAAGCACCACCAATTCCACCAAGAAAATCAATGATGCTG
CAACAGCAACAAAATGACATAAACAGACCACAAAAAGTTCAAACAACGCCACCGATTAGT
CAAACTAATTCCGTTGAAAAGAATGAAAATGTTATTTTGGCAAATATTATTCAACAAAAA
CAACAACAACAACAACATGATGATACAGACGACGAGGATGACGATTCAAATCCAATTTGT
GGGCCAGCGGAAACGATCACAGGAATCATTGATACACGTCCAATTGAGCAACGAACCAAT
TACGTCAGTTTTGCTTCGCTCACTAATAATGTAACGACAAATTTCAACCTTGTTACAATC
AACGATACATCTGCAAACTCATCTTCGTCATCAACATCAAAGGACTCAACTACGCATAAA
GATGACACAAACACGAGCAAGGCATCGAATACATATCTACTAAAAAGCAACCACTTGAAT
AATAATAACAATTTCAGCAATATAAATGGAACCAATAATCATCAACGACATATGTCGGTG
CCATTAAGCGGAGGCACACCAATAAAAACATTGCCAACTTCGTCCTCAACACTGCAAGCG
TCAATTAGTCAAAAATTGCCAAATAATTCACCATTAAAGGCTGCAACATCCACGTGTGCC
AACAATTCAAATCTACAACTGTATGAAAATGTTAAAATGAAATCTGCTGGGAATCTTATC
TCATTGAATAACCTTAATAACAATTCAAATCACAATAGTAGCAATTGCAACAATGTCCCA
TATGAAAACATTAATTTGGAATATATTAATAAACTCTTAAAGGAAGGATATTCGAAGGAA
AATGTTATGGCCGCGCTCTGCATTTCACGAAACAACTTTGAGATGGCTTGTGATATTTTG
CATGAGTTTGTAAGCACCAATCATCAGAAGGTCTGTGAAAATAATCGTTAA

>g9001.t1 Gene=g9001 Length=436
MSRKTPIQFVVATTTTTNNLQHTQMEQKPIIISSSSSLCSSSSTTSSSSSSSSSSTNNLA
NVNLLNGKIPKTIIVTTPPICSSVSSTVTNSSSSSSGNGSNKTSSLLIDLSNVEQMSSKT
INLPMNEEAPPIPPRKSMMLQQQQNDINRPQKVQTTPPISQTNSVEKNENVILANIIQQK
QQQQQHDDTDDEDDDSNPICGPAETITGIIDTRPIEQRTNYVSFASLTNNVTTNFNLVTI
NDTSANSSSSSTSKDSTTHKDDTNTSKASNTYLLKSNHLNNNNNFSNINGTNNHQRHMSV
PLSGGTPIKTLPTSSSTLQASISQKLPNNSPLKAATSTCANNSNLQLYENVKMKSAGNLI
SLNNLNNNSNHNSSNCNNVPYENINLEYINKLLKEGYSKENVMAALCISRNNFEMACDIL
HEFVSTNHQKVCENNR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g9001.t1 CDD cd14318 UBA_Cbl_like 385 424 6.60775E-13
5 g9001.t1 Gene3D G3DSA:1.10.8.10 DNA helicase RuvA subunit 380 431 1.6E-10
3 g9001.t1 MobiDBLite mobidb-lite consensus disorder prediction 141 162 -
2 g9001.t1 MobiDBLite mobidb-lite consensus disorder prediction 244 267 -
6 g9001.t1 ProSiteProfiles PS50030 Ubiquitin-associated domain (UBA) profile. 383 423 9.27
1 g9001.t1 SUPERFAMILY SSF46934 UBA-like 379 422 7.66E-6
4 g9001.t1 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 48 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed